RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 GOLGA5Q8TBA6 731 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 DDX27Q96GQ7 796 aaKnown RBP10.98□□□□□ -0.65
VPS28-204ENST00000526054 HAPLN2Q9GZV7 340 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 RPF1Q9H9Y2 349 aaKnown RBP10.98□□□□□ -0.65
VPS28-204ENST00000526054 PLEKHA5Q9HAU0 1116 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 SLC38A7Q9NVC3 462 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 HCFC1R1Q9NWW0 138 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 SIT1Q9Y3P8 196 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 PCDHA5Q9Y5H7 936 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.98□□□□□ -0.65
VPS28-204ENST00000526054 NOTCH4Q99466 2003 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 SMIM28A0A1B0GU29 152 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 I3L4J1 428 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 FAM189A1O60320 539 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 MBD3O95983 291 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 IGFBP6P24592 240 aaPredicted RBP10.97□□□□□ -0.65
VPS28-204ENST00000526054 ADSSP30520 456 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 HOXD13P35453 343 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 TNFSF9P41273 254 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 BRCC3P46736 316 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 POU5F1Q01860 360 aaKnown RBP10.97□□□□□ -0.65
VPS28-204ENST00000526054 UVSSAQ2YD98 709 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 SEZ6Q53EL9 994 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 XKR4Q5GH76 650 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 ZNF658Q5TYW1 1059 aaPredicted RBP10.97□□□□□ -0.65
VPS28-204ENST00000526054 CD302Q8IX05 232 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 NPAS3Q8IXF0 933 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 GUF1Q8N442 669 aaKnown RBP10.97□□□□□ -0.65
VPS28-204ENST00000526054 SPATA20Q8TB22 786 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 ITFG1Q8TB96 612 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 ING5Q8WYH8 240 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 SHDQ96IW2 340 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 KXD1Q9BQD3 176 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 CBWD1Q9BRT8 395 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 RPP25Q9BUL9 199 aaKnown RBP10.97□□□□□ -0.65
VPS28-204ENST00000526054 FOXQ1Q9C009 403 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 IKZF4Q9H2S9 585 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 CLSTN2Q9H4D0 955 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 AGPAT3Q9NRZ7 376 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 CNTN3Q9P232 1028 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 CPSF3Q9UKF6 684 aaKnown RBP10.97□□□□□ -0.65
VPS28-204ENST00000526054 BACE2Q9Y5Z0 518 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 FANCMQ8IYD8 2048 aa10.97□□□□□ -0.65
VPS28-204ENST00000526054 PODXLO00592 558 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 PRRG1O14668 218 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 TGFB1I1O43294 461 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 XPOTO43592 962 aaKnown RBP10.96□□□□□ -0.65
VPS28-204ENST00000526054 CALUO43852 315 aaPredicted RBP10.96□□□□□ -0.65
VPS28-204ENST00000526054 EXTL3O43909 919 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 LRG1P02750 347 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 KCNE1P15382 129 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 ACOT2P49753 483 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 STARD6P59095 220 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 GPC5P78333 572 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 ROR1Q01973 937 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 SOX4Q06945 474 aaPredicted RBP10.96□□□□□ -0.65
VPS28-204ENST00000526054 STIM1Q13586 685 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 MLF2Q15773 248 aaPredicted RBP10.96□□□□□ -0.65
VPS28-204ENST00000526054 ENOX2Q16206 610 aaKnown RBP10.96□□□□□ -0.65
VPS28-204ENST00000526054 SLC10A6Q3KNW5 377 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 ZBTB41Q5SVQ8 909 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 ZC3H14Q6PJT7 736 aaKnown RBP10.96□□□□□ -0.65
VPS28-204ENST00000526054 CD300LGQ6UXG3 332 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 ALKAL1Q6UXT8 129 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 RSPO2Q6UXX9 243 aaPredicted RBP10.96□□□□□ -0.65
VPS28-204ENST00000526054 RTL10Q7L3V2 364 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 C12orf56Q8IXR9 622 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 GPD1LQ8N335 351 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 NOC3LQ8WTT2 800 aaKnown RBP10.96□□□□□ -0.65
VPS28-204ENST00000526054 ERCC4Q92889 916 aaPredicted RBP10.96□□□□□ -0.65
VPS28-204ENST00000526054 SAAL1Q96ER3 474 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 TSPAN18Q96SJ8 248 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 FAM213AQ9BRX8 229 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 NUP62CLQ9H1M0 184 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 PCIF1Q9H4Z3 704 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 KIAA1586Q9HCI6 787 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 HSPBP1Q9NZL4 362 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 DLGAP2Q9P1A6 1054 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 DNMT3BQ9UBC3 853 aaKnown RBP10.96□□□□□ -0.65
VPS28-204ENST00000526054 MAN1B1Q9UKM7 699 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 MRPS23Q9Y3D9 190 aaKnown RBP10.96□□□□□ -0.65
VPS28-204ENST00000526054 NUB1Q9Y5A7 615 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 R4GN57 208 aa10.96□□□□□ -0.65
VPS28-204ENST00000526054 KANSL1LA0AUZ9 987 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 TTC26A0AVF1 554 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 PDXKO00764 312 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 CLIC2O15247 247 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 IL18RAPO95256 599 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 LMNAP02545 664 aaKnown RBP10.95□□□□□ -0.66
VPS28-204ENST00000526054 RHOP08100 348 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 ELF1P32519 619 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 PPP1R2P41236 205 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 CYP2J2P51589 502 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 PFKPQ01813 784 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 CAMK4Q16566 473 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 COBLL1Q53SF7 1204 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 VARS2Q5ST30 1063 aaKnown RBP10.95□□□□□ -0.66
VPS28-204ENST00000526054 SLC8B1Q6J4K2 584 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 C1orf210Q8IVY1 113 aa10.95□□□□□ -0.66
VPS28-204ENST00000526054 BRSK2Q8IWQ3 736 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms