RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 MC2RQ01718 297 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 PIGFQ07326 219 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 PREPLQ4J6C6 727 aaPredicted RBP3.08□□□□□ -1.92
CD44-216ENST00000525293 CCDC93Q567U6 631 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 KAZNQ674X7 775 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 VWA1Q6PCB0 445 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 SYCE2Q6PIF2 218 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 SLC30A10Q6XR72 485 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 FAM43BQ6ZT52 329 aaPredicted RBP3.08□□□□□ -1.92
CD44-216ENST00000525293 FAM98AQ8NCA5 519 aaKnown RBP3.08□□□□□ -1.92
CD44-216ENST00000525293 C3orf20Q8ND61 904 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 TOR1AIP2Q8NFQ8 470 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 FBXO41Q8TF61 875 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 ZNF384Q8TF68 577 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 TFAP2BQ92481 460 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 LPIN2Q92539 896 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 FBXL20Q96IG2 436 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 PDLIM2Q96JY6 352 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 TRIB1Q96RU8 372 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 SLAMF7Q9NQ25 335 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 IL17RBQ9NRM6 502 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 NEU2Q9Y3R4 380 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 PCDHA3Q9Y5H8 950 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 NT5C1B-RDH14C9J2C7 533 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 E9PLN8 166 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 POLRMTO00411 1230 aaKnown RBP3.07□□□□□ -1.92
CD44-216ENST00000525293 MPPED1O15442 326 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 SNUPNO95149 360 aaKnown RBP3.07□□□□□ -1.92
CD44-216ENST00000525293 ANXA1P04083 346 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 PPP3CBP16298 524 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 ZNF37AP17032 561 aaPredicted RBP3.07□□□□□ -1.92
CD44-216ENST00000525293 PDCP20941 246 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 DEKP35659 375 aaKnown RBP3.07□□□□□ -1.92
CD44-216ENST00000525293 PHKA1P46020 1223 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 RECQLP46063 649 aaPredicted RBP3.07□□□□□ -1.92
CD44-216ENST00000525293 ANXA11P50995 505 aaKnown RBP3.07□□□□□ -1.92
CD44-216ENST00000525293 POU6F2P78424 691 aaPredicted RBP3.07□□□□□ -1.92
CD44-216ENST00000525293 AKNAD1Q5T1N1 836 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 TAPT1Q6NXT6 567 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 SLC4A10Q6U841 1118 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 MICALCLQ6ZW33 695 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 ADGRG5Q8IZF4 528 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 SNX19Q92543 992 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 SCAMP4Q969E2 229 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 VOPP1Q96AW1 172 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 SMOQ99835 787 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 VKORC1Q9BQB6 163 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 HEPHQ9BQS7 1158 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 SPATA5L1Q9BVQ7 753 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 C1orf43Q9BWL3 253 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 KLK15Q9H2R5 256 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 BRD9Q9H8M2 597 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 ADARB2Q9NS39 739 aaKnown RBP3.07□□□□□ -1.92
CD44-216ENST00000525293 HOMER2Q9NSB8 354 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 SEMA4GQ9NTN9 838 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 GNL3LQ9NVN8 582 aaKnown RBP3.07□□□□□ -1.92
CD44-216ENST00000525293 ASB6Q9NWX5 421 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 SIDT1Q9NXL6 827 aaKnown RBP3.07□□□□□ -1.92
CD44-216ENST00000525293 SLC17A6Q9P2U8 582 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 SPEF1Q9Y4P9 236 aa3.07□□□□□ -1.92
CD44-216ENST00000525293 PRSS29PA6NIE9 313 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 LRRC3CA6NJW4 275 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 ZNF785A8K8V0 405 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 F5H697 171 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 PROM1O43490 865 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 VPS4BO75351 444 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 MATN4O95460 622 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 IL33O95760 270 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 C1RP00736 705 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 GJB1P08034 283 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 CHRM2P08172 466 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 GNAI3P08754 354 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 LPOP22079 712 aaPredicted RBP3.06□□□□□ -1.92
CD44-216ENST00000525293 CYP2C19P33261 490 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 IL12RB1P42701 662 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 NPTX2P47972 431 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 HNRNPMP52272 730 aaKnown RBP eCLIP3.06□□□□□ -1.92
CD44-216ENST00000525293 ZNF135P52742 658 aaPredicted RBP3.06□□□□□ -1.92
CD44-216ENST00000525293 MAPK10P53779 464 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 GNAI1P63096 354 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 HLXQ14774 488 aaPredicted RBP3.06□□□□□ -1.92
CD44-216ENST00000525293 BRDTQ58F21 947 aaPredicted RBP3.06□□□□□ -1.92
CD44-216ENST00000525293 KIAA0895LQ68EN5 471 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 TMPRSS9Q7Z410 1059 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 PEG10Q86TG7 708 aaKnown RBP3.06□□□□□ -1.92
CD44-216ENST00000525293 PDSS2Q86YH6 399 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 B3GALNT2Q8NCR0 500 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 ZCRB1Q8TBF4 217 aaKnown RBP3.06□□□□□ -1.92
CD44-216ENST00000525293 MYCBPAPQ8TBZ2 947 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 POC1BQ8TC44 478 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 NELL1Q92832 810 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 SECISBP2LQ93073 1101 aaKnown RBP3.06□□□□□ -1.92
CD44-216ENST00000525293 PGBD1Q96JS3 809 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 CLSPNQ9HAW4 1339 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 MRPS18AQ9NVS2 196 aaKnown RBP3.06□□□□□ -1.92
CD44-216ENST00000525293 ABCF2Q9UG63 623 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 NAP1L2Q9ULW6 460 aaPredicted RBP3.06□□□□□ -1.92
CD44-216ENST00000525293 AGAP1Q9UPQ3 857 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 POLHQ9Y253 713 aa3.06□□□□□ -1.92
CD44-216ENST00000525293 LUC7L2Q9Y383 392 aaKnown RBP3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms