RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 SERPINB13Q9UIV8 391 aa8.52□□□□□ -1.05
SDCBP-208ENST00000520228 SCN7AQ01118 1682 aa8.52□□□□□ -1.05
SDCBP-208ENST00000520228 SH3TC1Q8TE82 1336 aa8.52□□□□□ -1.05
SDCBP-208ENST00000520228 LAMB4A4D0S4 1761 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 PRAMEF4O60810 478 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 PHF2O75151 1096 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 CR2P20023 1033 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 ALDH1B1P30837 517 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 MGAT2Q10469 447 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 FZD5Q13467 585 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 Q6ZVL8 140 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 TRMT2AQ8IZ69 625 aaKnown RBP8.51□□□□□ -1.05
SDCBP-208ENST00000520228 SYNE4Q8N205 404 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 CCDC191Q8NCU4 936 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 FAM89AQ96GI7 184 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 RBM17Q96I25 401 aaKnown RBP8.51□□□□□ -1.05
SDCBP-208ENST00000520228 RPL10LQ96L21 214 aaKnown RBP8.51□□□□□ -1.05
SDCBP-208ENST00000520228 ADI1Q9BV57 179 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 TLR9Q9NR96 1032 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 CWC25Q9NXE8 425 aaPredicted RBP8.51□□□□□ -1.05
SDCBP-208ENST00000520228 ZIM2Q9NZV7 527 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 GIT1Q9Y2X7 761 aa8.51□□□□□ -1.05
SDCBP-208ENST00000520228 RFPL1O75677 317 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 GSPT1P15170 499 aaKnown RBP8.5□□□□□ -1.05
SDCBP-208ENST00000520228 ZSCAN20P17040 1043 aaPredicted RBP8.5□□□□□ -1.05
SDCBP-208ENST00000520228 EDNRBP24530 442 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 RIN1Q13671 783 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 SEPT2Q15019 361 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 UBXN11Q5T124 520 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 GJC2Q5T442 439 aaPredicted RBP8.5□□□□□ -1.05
SDCBP-208ENST00000520228 CMTM4Q8IZR5 234 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 OR2I1PQ8NGU4 316 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 NRG4Q8WWG1 115 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 HSPBAP1Q96EW2 488 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 LRRC37BQ96QE4 947 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 RBM15Q96T37 977 aaKnown RBP eCLIP8.5□□□□□ -1.05
SDCBP-208ENST00000520228 RAPGEFL1Q9UHV5 662 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 ANKRD6Q9Y2G4 727 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 IPPQ9Y573 584 aa8.5□□□□□ -1.05
SDCBP-208ENST00000520228 ADCY9O60503 1353 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 RIC1Q4ADV7 1423 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 AKR1B10O60218 316 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 PCCAP05165 728 aaPredicted RBP8.49□□□□□ -1.05
SDCBP-208ENST00000520228 IGKV5-2P06315 115 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 LRRC41Q15345 812 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 SHCBP1Q8NEM2 672 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 JPH3Q8WXH2 748 aaPredicted RBP8.49□□□□□ -1.05
SDCBP-208ENST00000520228 DNAAF4Q8WXU2 420 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 C20orf173Q96LM9 149 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 CRAMP1Q96RY5 1269 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 NUP88Q99567 741 aaPredicted RBP8.49□□□□□ -1.05
SDCBP-208ENST00000520228 NELFAQ9H3P2 528 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 IL23AQ9NPF7 189 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 TRPS1Q9UHF7 1281 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 ZNF180Q9UJW8 692 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 ZBTB21Q9ULJ3 1066 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 NRXN2Q9P2S2 1712 aa8.49□□□□□ -1.05
SDCBP-208ENST00000520228 GPR42O15529 346 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 CDC14BO60729 498 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 CT47B1P0C2W7 299 aaPredicted RBP8.48□□□□□ -1.05
SDCBP-208ENST00000520228 PF4V1P10720 104 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 SLC16A1P53985 500 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 KIF23Q02241 960 aaPredicted RBP8.48□□□□□ -1.05
SDCBP-208ENST00000520228 CCDC93Q567U6 631 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 KRT40Q6A162 431 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 FAM180AQ6UWF9 173 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 TAX1BP1Q86VP1 789 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 LINS1Q8NG48 757 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.48□□□□□ -1.05
SDCBP-208ENST00000520228 ZNF480Q8WV37 535 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 GNRHR2Q96P88 292 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 C12orf65Q9H3J6 166 aaKnown RBP8.48□□□□□ -1.05
SDCBP-208ENST00000520228 GPRC5DQ9NZD1 345 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 LIMCH1Q9UPQ0 1083 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 DNM3Q9UQ16 869 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 BCORQ6W2J9 1755 aa8.48□□□□□ -1.05
SDCBP-208ENST00000520228 NRP1O14786 923 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 HTRA2O43464 458 aaPredicted RBP8.47□□□□□ -1.05
SDCBP-208ENST00000520228 BBOX1O75936 387 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 GASTP01350 101 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 GYPEP15421 78 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 ADSLP30566 484 aaPredicted RBP8.47□□□□□ -1.05
SDCBP-208ENST00000520228 CRHR1P34998 444 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 SLC6A9P48067 706 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 GCKRQ14397 625 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 NOMO1Q15155 1222 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 SF3B3Q15393 1217 aaKnown RBP8.47□□□□□ -1.05
SDCBP-208ENST00000520228 ALDH1L2Q3SY69 923 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 FBLN7Q53RD9 439 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 OLFM4Q6UX06 510 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 DPF2Q92785 391 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 PLA2G12BQ9BX93 195 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 TMX4Q9H1E5 349 aaPredicted RBP8.47□□□□□ -1.05
SDCBP-208ENST00000520228 TAOK3Q9H2K8 898 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 BCO1Q9HAY6 547 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 SMC4Q9NTJ3 1288 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 RNF181Q9P0P0 153 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 PNMA8BQ9ULN7 279 aaPredicted RBP8.47□□□□□ -1.05
SDCBP-208ENST00000520228 SIK3Q9Y2K2 1263 aa8.47□□□□□ -1.05
SDCBP-208ENST00000520228 ZNF536O15090 1300 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms