RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 SMURF1Q9HCE7 757 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 GOLGA6AQ9NYA3 693 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 CWC15Q9P013 229 aaKnown RBP6.25□□□□□ -1.41
NUP54-218ENST00000515460 RSPH14Q9UHP6 348 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 MAP3K2Q9Y2U5 619 aa6.25□□□□□ -1.41
NUP54-218ENST00000515460 DDX49Q9Y6V7 483 aaKnown RBP6.25□□□□□ -1.41
NUP54-218ENST00000515460 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.24□□□□□ -1.41
NUP54-218ENST00000515460 RASGRP1O95267 797 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 CSF1RP07333 972 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 RAC3P60763 192 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 CHAF1AQ13111 956 aaPredicted RBP6.24□□□□□ -1.41
NUP54-218ENST00000515460 KLF10Q13118 480 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 ATP2B3Q16720 1220 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 NRN1LQ496H8 165 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 STRIP1Q5VSL9 837 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 CCDC30Q5VVM6 783 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 JAKMIP3Q5VZ66 844 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 NECAB2Q7Z6G3 386 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 SLC7A14Q8TBB6 771 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 ZBED3Q96IU2 234 aaPredicted RBP6.24□□□□□ -1.41
NUP54-218ENST00000515460 DEFB118Q96PH6 123 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 PRKRIP1Q9H875 184 aaPredicted RBP6.24□□□□□ -1.41
NUP54-218ENST00000515460 INCENPQ9NQS7 918 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 ING1Q9UK53 422 aaPredicted RBP6.24□□□□□ -1.41
NUP54-218ENST00000515460 FBXO10Q9UK96 956 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 FZD1Q9UP38 647 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 GVINP1Q7Z2Y8 2422 aa6.24□□□□□ -1.41
NUP54-218ENST00000515460 DLG5Q8TDM6 1919 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 SNAP23O00161 211 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 HIP1RO75146 1068 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 REC8O95072 547 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 DDX58O95786 925 aaKnown RBP6.23□□□□□ -1.41
NUP54-218ENST00000515460 C4BPAP04003 597 aaKnown RBP6.23□□□□□ -1.41
NUP54-218ENST00000515460 PAX7P23759 505 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 KLRK1P26718 216 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 AOAHP28039 575 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 BIRC2Q13490 618 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 RABEP1Q15276 862 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 TERF2Q15554 542 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 WDR72Q3MJ13 1102 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 C1QTNF12Q5T7M4 302 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 TTLL5Q6EMB2 1281 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 CXXC5Q7LFL8 322 aaKnown RBP6.23□□□□□ -1.41
NUP54-218ENST00000515460 BRAPQ7Z569 592 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 SUGP1Q8IWZ8 645 aaKnown RBP6.23□□□□□ -1.41
NUP54-218ENST00000515460 TSR2Q969E8 191 aaKnown RBP6.23□□□□□ -1.41
NUP54-218ENST00000515460 MRFAP1L1Q96HT8 127 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 CDC5LQ99459 802 aaKnown RBP6.23□□□□□ -1.41
NUP54-218ENST00000515460 NOL10Q9BSC4 688 aaKnown RBP6.23□□□□□ -1.41
NUP54-218ENST00000515460 MENTQ9BUN1 341 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 COA1Q9GZY4 146 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 SYNPO2Q9UMS6 1093 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 ZKSCAN5Q9Y2L8 839 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 COQ6Q9Y2Z9 468 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 CACNA1HO95180 2353 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 COL4A6Q14031 1691 aa6.23□□□□□ -1.41
NUP54-218ENST00000515460 MED23Q9ULK4 1368 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 ANKRD36CQ5JPF3 1778 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 A0A1B0GUL7 405 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 SLC12A8A0AV02 714 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 MANSC4A6NHS7 340 aaPredicted RBP6.22□□□□□ -1.41
NUP54-218ENST00000515460 NPIPB8E9PQR5 432 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 KCNK3O14649 394 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 MAGEA8P43361 318 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 SMAD3P84022 425 aaKnown RBP6.22□□□□□ -1.41
NUP54-218ENST00000515460 GCKRQ14397 625 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 ZSCAN26Q16670 478 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 RNF151Q2KHN1 245 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 CCDC184Q52MB2 194 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 KRTAP5-3Q6L8H2 238 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 ASCL5Q7RTU5 278 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 FUKQ8N0W3 1084 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 NME8Q8N427 588 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 CERS5Q8N5B7 392 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 FAM184AQ8NB25 1140 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 LSM14AQ8ND56 463 aaKnown RBP6.22□□□□□ -1.41
NUP54-218ENST00000515460 ANKRD7Q92527 254 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 DPYSL5Q9BPU6 564 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 PLA2G12BQ9BX93 195 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 PCED1AQ9H1Q7 454 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 RANBP17Q9H2T7 1088 aaKnown RBP6.22□□□□□ -1.41
NUP54-218ENST00000515460 C12orf65Q9H3J6 166 aaKnown RBP6.22□□□□□ -1.41
NUP54-218ENST00000515460 PRDM12Q9H4Q4 367 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 NCOA5Q9HCD5 579 aaKnown RBP6.22□□□□□ -1.41
NUP54-218ENST00000515460 KCNH7Q9NS40 1196 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 GALNT8Q9NY28 637 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 PCDHAC2Q9Y5I4 1007 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 RPS6KL1Q9Y6S9 549 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 VPS13AQ96RL7 3174 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 ZNF804BA4D1E1 1349 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 SYNRGQ9UMZ2 1314 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 LRRC37AA6NMS7 1700 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 TRIOO75962 3097 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 TAF1P21675 1872 aa6.22□□□□□ -1.41
NUP54-218ENST00000515460 B4E1Z4 1266 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 OVOL3O00110 214 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 SCDO00767 359 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 PLD2O14939 933 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 CDC14BO60729 498 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 TAF5LO75529 589 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms