RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 TTC39CQ8N584 583 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 CD248Q9HCU0 757 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 AIPL1Q9NZN9 384 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 SUN2Q9UH99 717 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 ATP8B3O60423 1300 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 ARHGEF37A1IGU5 675 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 CHEK2O96017 543 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 ICAM1P05362 532 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 STX3Q13277 289 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 CUL2Q13617 745 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 ATF7IP2Q5U623 682 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 RASSF3Q86WH2 238 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 NDUFAF2Q8N183 169 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 KCTD17Q8N5Z5 321 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 SCG3Q8WXD2 468 aaKnown RBP13.31□□□□□ -0.28
USP53-209ENST00000514665 ZKSCAN4Q969J2 545 aaPredicted RBP13.31□□□□□ -0.28
USP53-209ENST00000514665 ABTB1Q969K4 478 aaPredicted RBP13.31□□□□□ -0.28
USP53-209ENST00000514665 ALKBH8Q96BT7 664 aaKnown RBP13.31□□□□□ -0.28
USP53-209ENST00000514665 CDC42EP4Q9H3Q1 356 aaKnown RBP13.31□□□□□ -0.28
USP53-209ENST00000514665 SARS2Q9NP81 518 aaKnown RBP13.31□□□□□ -0.28
USP53-209ENST00000514665 JCADQ9P266 1359 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 LOC100653049A0A140TA62 436 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 DDX3XO00571 662 aaKnown RBP eCLIP13.31□□□□□ -0.284e-7■■■□□ 17.9
USP53-209ENST00000514665 GSTA4O15217 222 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 KRT34O76011 436 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 APOEP02649 317 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 RARGP13631 454 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 CAP2P40123 477 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 PRAMEP78395 509 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.31□□□□□ -0.28
USP53-209ENST00000514665 HSPA8P11142 646 aaKnown RBP13.3□□□□□ -0.28
USP53-209ENST00000514665 ZFXP17010 805 aaPredicted RBP13.3□□□□□ -0.28
USP53-209ENST00000514665 KRT4P19013 534 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 MEA1Q16626 185 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 TSEN2Q8NCE0 465 aaKnown RBP13.3□□□□□ -0.28
USP53-209ENST00000514665 CXorf38Q8TB03 319 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 USP33Q8TEY7 942 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 THTPAQ9BU02 230 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 TRPV6Q9H1D0 765 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 KIF9Q9HAQ2 790 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 METTL5Q9NRN9 209 aaKnown RBP13.3□□□□□ -0.28
USP53-209ENST00000514665 GGA3Q9NZ52 723 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 RNF181Q9P0P0 153 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 THEGQ9P2T0 379 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 TSR3Q9UJK0 312 aaKnown RBP13.3□□□□□ -0.28
USP53-209ENST00000514665 TNS2Q63HR2 1409 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 SPATA31D1Q6ZQQ2 1576 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 RCCD1A6NED2 376 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 NLRP11P59045 1033 aaKnown RBP13.3□□□□□ -0.28
USP53-209ENST00000514665 KCTD19Q17RG1 926 aaPredicted RBP13.3□□□□□ -0.28
USP53-209ENST00000514665 MROH9Q5TGP6 573 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 TNIP3Q96KP6 325 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 FAM96AQ9H5X1 160 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 KRT82Q9NSB4 513 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 RNF103-CHMP3A0A140T963 221 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 B2RBV5 119 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 EML1O00423 815 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 MAFGO15525 162 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 CCDC33Q8N5R6 958 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 TTC8Q8TAM2 541 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 SPIRE2Q8WWL2 714 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 SLC5A5Q92911 643 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 NT5C1AQ9BXI3 368 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 FOXP3Q9BZS1 431 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 SMARCAD1Q9H4L7 1026 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 MYOZ2Q9NPC6 264 aa13.3□□□□□ -0.28
USP53-209ENST00000514665 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.3□□□□□ -0.28
USP53-209ENST00000514665 GZMAP12544 262 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 PHEXP78562 749 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 CYB5D1Q6P9G0 228 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 WDR59Q6PJI9 974 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 COL23A1Q86Y22 540 aaPredicted RBP13.29□□□□□ -0.28
USP53-209ENST00000514665 ARID3BQ8IVW6 561 aaPredicted RBP13.29□□□□□ -0.28
USP53-209ENST00000514665 GMCL1Q96IK5 515 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 CENPKQ9BS16 269 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 MTMR12Q9C0I1 747 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 OLFML3Q9NRN5 406 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 TRIM33Q9UPN9 1127 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 C19orf81C9J6K1 198 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 RNF225M0QZC1 329 aaPredicted RBP13.29□□□□□ -0.28
USP53-209ENST00000514665 DFFAO00273 331 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 DYNC1LI2O43237 492 aaPredicted RBP13.29□□□□□ -0.28
USP53-209ENST00000514665 GMPSP49915 693 aaPredicted RBP13.29□□□□□ -0.28
USP53-209ENST00000514665 ATXN3P54252 364 aaPredicted RBP13.29□□□□□ -0.28
USP53-209ENST00000514665 TPI1P60174 286 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 TSPY1Q01534 308 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 CENPCQ03188 943 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 ITPRIPL1Q6GPH6 555 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 EFCAB12Q6NXP0 572 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 ZFPM1Q8IX07 1006 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 THEM5Q8N1Q8 247 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 AGGF1Q8N302 714 aaeCLIP13.29□□□□□ -0.28
USP53-209ENST00000514665 CEP70Q8NHQ1 597 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 TATDN2Q93075 761 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 SERPINB12Q96P63 405 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 SHCBP1LQ9BZQ2 653 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 XAB2Q9HCS7 855 aaKnown RBP13.29□□□□□ -0.28
USP53-209ENST00000514665 TRIM49D1C9J1S8 452 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 KLRC4O43908 158 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 CTCFP49711 727 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms