RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 RCCD1A6NED2 376 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 KPNA7A9QM74 516 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 HUS1O60921 280 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 MMEP08473 750 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 NOP2P46087 812 aaKnown RBP17.07■□□□□ 0.32
NUP54-214ENST00000514307 GUCY2FP51841 1108 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 ZNF132P52740 706 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 GPC5P78333 572 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 PLEKHG4Q58EX7 1191 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 GLB1LQ6UWU2 654 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 UNC93AQ86WB7 457 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 ZNF606Q8WXB4 792 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 RSPH1Q8WYR4 309 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 TMEM176AQ96HP8 235 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 VCPIP1Q96JH7 1222 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 ZNF518BQ9C0D4 1074 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 TSPYL2Q9H2G4 693 aaPredicted RBP17.07■□□□□ 0.32
NUP54-214ENST00000514307 HIPK3Q9H422 1215 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 C11orf49Q9H6J7 331 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 ELAC1Q9H777 363 aaKnown RBP17.07■□□□□ 0.32
NUP54-214ENST00000514307 TUBGCP4Q9UGJ1 667 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 CEP83Q9Y592 693 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 SNX9Q9Y5X1 595 aa17.07■□□□□ 0.32
NUP54-214ENST00000514307 ARHGEF37A1IGU5 675 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 MACROD2A1Z1Q3 448 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 TMCO5BA8MYB1 307 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 C9IYK1 514 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 ENPP3O14638 875 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 PTGESO14684 152 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 MGEA5O60502 916 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 LSM8O95777 96 aaKnown RBP17.06■□□□□ 0.32
NUP54-214ENST00000514307 MYBL1P10243 752 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 VDRP11473 427 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 FMO1Q01740 532 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 STILQ15468 1287 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 CLEC16AQ2KHT3 1053 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 NECAB2Q7Z6G3 386 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 RTN4RL1Q86UN2 441 aaPredicted RBP17.06■□□□□ 0.32
NUP54-214ENST00000514307 RHOT2Q8IXI1 618 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 URGCPQ8TCY9 931 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 HEXIM2Q96MH2 286 aaKnown RBP17.06■□□□□ 0.32
NUP54-214ENST00000514307 PCDHB18PQ96TA0 734 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 NT5C1AQ9BXI3 368 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 SNX25Q9H3E2 840 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 TMEM39AQ9NV64 488 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 PCDHB7Q9Y5E2 793 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 DUSP10Q9Y6W6 482 aa17.06■□□□□ 0.32
NUP54-214ENST00000514307 HOXA2O43364 376 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 CILPO75339 1184 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 RFC2P35250 354 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 MLH1P40692 756 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 MNX1P50219 401 aaPredicted RBP17.05■□□□□ 0.32
NUP54-214ENST00000514307 CDH8P55286 799 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 LILRA4P59901 499 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 FAAP100Q0VG06 881 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 MBTPS1Q14703 1052 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 TCEAL1Q15170 157 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 LIN9Q5TKA1 542 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 SCARA3Q6AZY7 606 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 SCARA5Q6ZMJ2 495 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 ZNF598Q86UK7 904 aaKnown RBP17.05■□□□□ 0.32
NUP54-214ENST00000514307 SLC35F6Q8N357 371 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 TMEM35BQ8NCS4 154 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 APPL2Q8NEU8 664 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 DBF4BQ8NFT6 615 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 LPPQ93052 612 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 ZFP42Q96MM3 310 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 NAPGQ99747 312 aaPredicted RBP17.05■□□□□ 0.32
NUP54-214ENST00000514307 OSBPL7Q9BZF2 842 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 TMEM161AQ9NX61 479 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 LRFN2Q9ULH4 789 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 PCDHGC3Q9UN70 934 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 JRKLQ9Y4A0 524 aa17.05■□□□□ 0.32
NUP54-214ENST00000514307 A0A0U1RQJ8 604 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 INPPL1O15357 1258 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 ABL1P00519 1130 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 CD19P15391 556 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 GNL1P36915 607 aaPredicted RBP17.04■□□□□ 0.32
NUP54-214ENST00000514307 NSFP46459 744 aaKnown RBP17.04■□□□□ 0.32
NUP54-214ENST00000514307 RAD23BP54727 409 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 INCA1Q0VD86 236 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 GRIK3Q13003 919 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 CNGA2Q16280 664 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 TRIM60Q495X7 471 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 ZNF394Q53GI3 561 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 DCLRE1AQ6PJP8 1040 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 SYCE1Q8N0S2 351 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 TOP6BLQ8N6T0 577 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 MSANTD4Q8NCY6 345 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 ATRIPQ8WXE1 791 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 IRX2Q9BZI1 471 aaPredicted RBP17.04■□□□□ 0.32
NUP54-214ENST00000514307 CXCL16Q9H2A7 254 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 LHX5Q9H2C1 402 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 TRIM10Q9UDY6 481 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 ATP11BQ9Y2G3 1177 aa17.04■□□□□ 0.32
NUP54-214ENST00000514307 TRIP12Q14669 1992 aaPredicted RBP17.03■□□□□ 0.32
NUP54-214ENST00000514307 CCDC85CA6NKD9 419 aa17.03■□□□□ 0.32
NUP54-214ENST00000514307 NBNO60934 754 aa17.03■□□□□ 0.32
NUP54-214ENST00000514307 URI1O94763 535 aaPredicted RBP17.03■□□□□ 0.32
NUP54-214ENST00000514307 KIF4AO95239 1232 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms