RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 OLA1Q9NTK5 396 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ATXN10Q9UBB4 475 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 PI4KBQ9UBF8 816 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 TRIM10Q9UDY6 481 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 DPP7Q9UHL4 492 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 SMG5Q9UPR3 1016 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 GRID2IPA4D2P6 1211 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 TTLL1O95922 423 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 TAB1Q15750 504 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 MAPK11Q15759 364 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 THEMIS2Q5TEJ8 643 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 TBC1D9BQ66K14 1250 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 LMBRD2Q68DH5 695 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 IRGCQ6NXR0 463 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 IYDQ6PHW0 289 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 KLHL17Q6TDP4 642 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 NEK10Q6ZWH5 1172 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 RRM2BQ7LG56 351 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 GLYCTKQ8IVS8 523 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ARRDC4Q8NCT1 418 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 DHX38Q92620 1227 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 EPAS1Q99814 870 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 C11orf70Q9BRQ4 267 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 RPRD1BQ9NQG5 326 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 SMARCAL1Q9NZC9 954 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 HERC5Q9UII4 1024 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 PP2D1A8MPX8 630 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 CCND2P30279 289 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 HOXA7P31268 230 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 TGFB2P61812 414 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 PPP1R2P3Q6NXS1 205 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 TSHZ1Q6ZSZ6 1077 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 KRT74Q7RTS7 529 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 FGD2Q7Z6J4 655 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 NOA1Q8NC60 698 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 MDM1Q8TC05 714 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 NSL1Q96IY1 281 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 APOL4Q9BPW4 351 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 MRPL1Q9BYD6 325 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 UBN1Q9NPG3 1134 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 KRT84Q9NSB2 600 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 COPG2Q9UBF2 871 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 HPCAL4Q9UM19 191 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 ANKRD26Q9UPS8 1709 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF233A6NK53 670 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 ASB14A6NK59 587 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 TRIM64CA6NLI5 447 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 FTLP02792 175 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 ENO3P13929 434 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 GSTT1P30711 240 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 PTGS2P35354 604 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 ATXN3P54252 364 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 TRIP4Q15650 581 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 AGBL2Q5U5Z8 902 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 EZH1Q92800 747 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 CPVLQ9H3G5 476 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 PIH1D3Q9NQM4 214 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 AGLP35573 1532 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 PIPSLA2A3N6 862 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 FAM187AA6NFU0 413 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 CENPXA8MT69 81 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 ATP6V1G2O95670 118 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 ATXN8OSP0DMR3 200 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 PDHBP11177 359 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 PMLP29590 882 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 YWHABP31946 246 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 PDAP1Q13442 181 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 ANO4Q32M45 955 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 MIS18BP1Q6P0N0 1132 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 NDUFAF2Q8N183 169 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 OTUB1Q96FW1 271 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 CCDC59Q9P031 241 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 MTO1Q9Y2Z2 717 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 ADGRA3Q8IWK6 1321 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 F5H423 210 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 RNF103O00237 685 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 MED7O43513 233 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 USP1O94782 785 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 NR3C1P04150 777 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 PEX5P50542 639 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 PTK2BQ14289 1009 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 COG2Q14746 738 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 SWT1Q5T5J6 900 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF618Q5T7W0 954 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 REM2Q8IYK8 340 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF564Q8TBZ8 553 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 RBM41Q96IZ5 413 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 HEXIM2Q96MH2 286 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 DMAP1Q9NPF5 467 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 CACNA2D2Q9NY47 1150 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 AIPL1Q9NZN9 384 aa9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 DBR1Q9UK59 544 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-218ENST00000513024 FAM95CA0A1B0GW59 222 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 USP17L5A8MUK1 530 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 GNB5O14775 395 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 BIRC5O15392 142 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 HOXA13P31271 388 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 FXR1P51114 621 aaKnown RBP eCLIP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 PEX3P56589 373 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms