RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 HHATQ5VTY9 493 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 NIPA1Q7RTP0 329 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 TAS1R3Q7RTX0 852 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 ABRAQ8N0Z2 381 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 ZCCHC9Q8N567 271 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 RBBP8NLQ8NC74 664 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 LRRC8CQ8TDW0 803 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 TMEM174Q8WUU8 243 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 SMC6Q96SB8 1091 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 MRPL47Q9HD33 250 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 ANKFY1Q9P2R3 1169 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 NKX1-2Q9UD57 310 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 RIPK3Q9Y572 518 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 POTEJP0CG39 1038 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 JAK3P52333 1124 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 KRT76Q01546 638 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 FEZF2Q8TBJ5 459 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 TRIM11Q96F44 468 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 MOV10L1Q9BXT6 1211 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 DCTN4Q9UJW0 460 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 LRRD1A4D1F6 860 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 MYBL1P10243 752 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 ANKRD20A2Q5SQ80 823 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 ANKRD20A1Q5TYW2 823 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 ANKRD20A3Q5VUR7 823 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 TRIM68Q6AZZ1 485 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 KATNAL2Q8IYT4 538 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 EXD1Q8NHP7 514 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 NTPCRQ9BSD7 190 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 TIPINQ9BVW5 301 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 TARS2Q9BW92 718 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 KIAA1683Q9H0B3 1180 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 POLR3FQ9H1D9 316 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 QTRT2Q9H974 415 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 EURLQ9NYK6 297 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 AGO2Q9UKV8 859 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 CNTNAP1P78357 1384 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 SGK1O00141 431 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 DNALI1O14645 258 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 LIASO43766 372 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 VNN1O95497 513 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 ATP2A2P16615 1042 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 ACO1P21399 889 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 SSTR1P30872 391 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 GTF2H1P32780 548 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 OVGP1Q12889 678 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 CUL2Q13617 745 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 DCUN1D2Q6PH85 259 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 BZW1Q7L1Q6 419 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 KRT27Q7Z3Y8 459 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 TEX2Q8IWB9 1127 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 OR5B17Q8NGF7 314 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 NUB1Q9Y5A7 615 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 LY75O60449 1722 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 ZNF541Q9H0D2 1346 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 LRRIQ4A6NIV6 560 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 PSTPIP1O43586 416 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 ONECUT3O60422 494 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 C4BPAP04003 597 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 POLGP54098 1239 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 RSBN1LQ6PCB5 846 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 EP400NLQ6ZTU2 488 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 GRAMD1AQ96CP6 724 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 WNK4Q96J92 1243 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 TRPC5Q9UL62 973 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 ZMYND8Q9ULU4 1186 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 USH1CQ9Y6N9 552 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 UBR3Q6ZT12 1888 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 PLA2G6O60733 806 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 FGFR1P11362 822 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 KRT4P19013 534 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 SFNP31947 248 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 EFTUD2Q15029 972 aaKnown RBP eCLIP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 C15orf39Q6ZRI6 1047 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 SAMD3Q8N6K7 520 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 DENND1AQ8TEH3 1009 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 SPIRE2Q8WWL2 714 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 MCEEQ96PE7 176 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 PXMP2Q9NR77 195 aa9.78□□□□□ -0.84
LIMCH1-215ENST00000512632 NR3C2P08235 984 aa9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 GARTP22102 1010 aa9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 LVRNQ6Q4G3 990 aa9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 CCDC60Q8IWA6 550 aaPredicted RBP9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 LARGE2Q8N3Y3 721 aa9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 ZNF606Q8WXB4 792 aa9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 MAK16Q9BXY0 300 aaKnown RBP9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 DEFB129Q9H1M3 183 aa9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 NPHS2Q9NP85 383 aa9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 ZNF277Q9NRM2 450 aaPredicted RBP9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 TXLNGQ9NUQ3 528 aa9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 RBAKQ9NYW8 714 aaPredicted RBP9.77□□□□□ -0.84
LIMCH1-215ENST00000512632 LRRC37AA6NMS7 1700 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 QSER1Q2KHR3 1735 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 EXTL3O43909 919 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 EPHB2P29323 1055 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 ALDH3A1P30838 453 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 TAF11Q15544 211 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 SEPT7Q16181 437 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 SYCP2LQ5T4T6 812 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms