RNA–Protein interactions for RNA: ENST00000512431.5

DDX41-215, Transcript of DEAD-box helicase 41, human

TSL 5

Gene DDX41, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-215	ENST00000512431	TNK2	Q07912	1038 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	STXBP5	Q5T5C0	1151 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	PKN3	Q6P5Z2	889 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	ITIH5	Q86UX2	942 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	BEST2	Q8NFU1	509 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	C18orf25	Q96B23	403 aa	Predicted RBP	13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	LRRC3B	Q96PB8	259 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	GCNA	Q96QF7	691 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	MTMR9	Q96QG7	549 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	POLR3C	Q9BUI4	534 aa	Predicted RBP	13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	SCNM1	Q9BWG6	230 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	CDT1	Q9H211	546 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	CNTN3	Q9P232	1028 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	LHX6	Q9UPM6	363 aa		13.72	□□□□□ -0.21
DDX41-215	ENST00000512431	ATRX	P46100	2492 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	PHLPP2	Q6ZVD8	1323 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	OR6C75	A6NL08	312 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	CCDC169	A6NNP5	214 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	KHNYN	O15037	678 aa	Known RBP	13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	MED24	O75448	989 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	MCF2	P10911	925 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	CSRP1	P21291	193 aa	Known RBP	13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	WEE1	P30291	646 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	GBP1	P32455	592 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	GPR17	Q13304	367 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	TMEM196	Q5HYL7	178 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	ZCCHC14	Q8WYQ9	949 aa	Known RBP	13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	PSMG2	Q969U7	264 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	ACO2	Q99798	780 aa	Known RBP	13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	MRPL4	Q9BYD3	311 aa	Known RBP	13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	DNAJC25	Q9H1X3	360 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	TASP1	Q9H6P5	420 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	TMEM9B	Q9NQ34	198 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	GKN1	Q9NS71	199 aa		13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	ORC3	Q9UBD5	711 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX41-215	ENST00000512431	BCLAF3	A2AJT9	711 aa	Known RBP	13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	TRDMT1	O14717	391 aa	Known RBP	13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	RNF40	O75150	1001 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	OAZ2	O95190	189 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	OR4Q2	P0C623	313 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	DRD1	P21728	446 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	RPA1	P27694	616 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	CACNB1	Q02641	598 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	RING1	Q06587	406 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	SCRN1	Q12765	414 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	RUNX3	Q13761	415 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	VEPH1	Q14D04	833 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	TAF12	Q16514	161 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	FBXO43	Q4G163	708 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	ARMCX5	Q6P1M9	558 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	DSTYK	Q6XUX3	929 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	GAREM2	Q75VX8	874 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	C11orf74	Q86VG3	221 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	HHIP	Q96QV1	700 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	MKNK1	Q9BUB5	465 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	POLD4	Q9HCU8	107 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	PDRG1	Q9NUG6	133 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	WASF3	Q9UPY6	502 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	SLC27A5	Q9Y2P5	690 aa		13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	TIMM13	Q9Y5L4	95 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX41-215	ENST00000512431	LNP1	A1A4G5	178 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431		M0QZQ0	153 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	PRAMEF12	O95522	483 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	APBB3	O95704	486 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	HARS	P12081	509 aa	Known RBP	13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	CDC25C	P30307	473 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	CENPP	Q6IPU0	288 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	FSTL4	Q6MZW2	842 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	CC2D1A	Q6P1N0	951 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	MPZL3	Q6UWV2	235 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	GATA6	Q92908	595 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	TNFRSF25	Q93038	417 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	KIF12	Q96FN5	646 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	TARS2	Q9BW92	718 aa	Known RBP	13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	SLC32A1	Q9H598	525 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	TMEM134	Q9H6X4	195 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	PTPRH	Q9HD43	1115 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	ZMYM5	Q9UJ78	669 aa		13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX41-215	ENST00000512431	CNOT1	A5YKK6	2376 aa	Known RBP	13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	ASPM	Q8IZT6	3477 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	SPEG	Q15772	3267 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	TOP3B	O95985	862 aa	Known RBP	13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	EGF	P01133	1207 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	MUT	P22033	750 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	RDX	P35241	583 aa	Known RBP	13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	AVPR1A	P37288	418 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	TUFM	P49411	452 aa	Known RBP	13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	DGKE	P52429	567 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	PEX3	P56589	373 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	TRIM29	Q14134	588 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	MYBPC2	Q14324	1141 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	UAP1L1	Q3KQV9	507 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	USP39	Q53GS9	565 aa	Known RBP	13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	HAUS3	Q68CZ6	603 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	SYT13	Q7L8C5	426 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	ATAD1	Q8NBU5	361 aa		13.68	□□□□□ -0.22
DDX41-215	ENST00000512431	ACD	Q96AP0	544 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms