RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TIMM13Q9Y5L4 95 aaPredicted RBP31.8■■■□□ 2.68
LIMCH1-211ENST00000509638 TMC7Q7Z402 723 aa31.79■■■□□ 2.68
LIMCH1-211ENST00000509638 GAS2L3Q86XJ1 694 aa31.79■■■□□ 2.68
LIMCH1-211ENST00000509638 AUTS2Q8WXX7 1259 aa31.79■■■□□ 2.68
LIMCH1-211ENST00000509638 CRACR2AQ9BSW2 395 aa31.79■■■□□ 2.68
LIMCH1-211ENST00000509638 PCDHGC5Q9Y5F6 944 aa31.79■■■□□ 2.68
LIMCH1-211ENST00000509638 C2CD2LO14523 706 aa31.78■■■□□ 2.68
LIMCH1-211ENST00000509638 CTSAP10619 480 aa31.78■■■□□ 2.68
LIMCH1-211ENST00000509638 DSG1Q02413 1049 aa31.78■■■□□ 2.68
LIMCH1-211ENST00000509638 PLPP4Q5VZY2 271 aa31.78■■■□□ 2.68
LIMCH1-211ENST00000509638 SCARA5Q6ZMJ2 495 aa31.78■■■□□ 2.68
LIMCH1-211ENST00000509638 APOBEC3GQ9HC16 384 aaKnown RBP31.78■■■□□ 2.68
LIMCH1-211ENST00000509638 L1RE1Q9UN81 338 aa31.78■■■□□ 2.68
LIMCH1-211ENST00000509638 POLIQ9UNA4 740 aa31.78■■■□□ 2.68
LIMCH1-211ENST00000509638 ARHGEF37A1IGU5 675 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 GTPBP10A4D1E9 387 aaKnown RBP31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 HUS1O60921 280 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 CA8P35219 290 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 IRS1P35568 1242 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 WDR44Q5JSH3 913 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 APPL2Q8NEU8 664 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 RIN2Q8WYP3 895 aaPredicted RBP31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 MMS19Q96T76 1030 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 EYSQ5T1H1 3165 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 LRRC10BA6NIK2 292 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 LGALS16A8MUM7 142 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 PTPN14Q15678 1187 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 PTPROQ16827 1216 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 VARS2Q5ST30 1063 aaKnown RBP31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 GBP6Q6ZN66 633 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 LMO3Q8TAP4 145 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 NIF3L1Q9GZT8 377 aa31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 INTS2Q9H0H0 1204 aaKnown RBP31.77■■■□□ 2.68
LIMCH1-211ENST00000509638 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 FSCN2O14926 492 aa31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 SMC1AQ14683 1233 aaKnown RBP31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 SOWAHAQ2M3V2 549 aa31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 WSCD1Q658N2 575 aa31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 PRSS55Q6UWB4 352 aaPredicted RBP31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 PDCL2Q8N4E4 241 aa31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 TOP6BLQ8N6T0 577 aa31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 MICAL1Q8TDZ2 1067 aa31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 MRPL38Q96DV4 380 aaKnown RBP31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 SMYD3Q9H7B4 428 aa31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 MRPL17Q9NRX2 175 aaKnown RBP31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 DSEQ9UL01 958 aa31.76■■■□□ 2.67
LIMCH1-211ENST00000509638 PRRC2BQ5JSZ5 2229 aaKnown RBP31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 SERPINC1P01008 464 aa31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 CYP11A1P05108 521 aa31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 P4HA1P13674 534 aa31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 TYMPP19971 482 aa31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 ASPAP45381 313 aa31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 YWHAHQ04917 246 aaPredicted RBP31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 LRMPQ12912 555 aa31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 EXOC3L4Q17RC7 722 aa31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 KIAA0319Q5VV43 1072 aa31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 ADGRF2Q8IZF7 708 aa31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 PIK3R5Q8WYR1 880 aa31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 RBSNQ9H1K0 784 aa31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 NGRNQ9NPE2 291 aaKnown RBP31.75■■■□□ 2.67
LIMCH1-211ENST00000509638 BMS1Q14692 1282 aaKnown RBP31.74■■■□□ 2.67
LIMCH1-211ENST00000509638 PSMD5Q16401 504 aa31.74■■■□□ 2.67
LIMCH1-211ENST00000509638 FKBP15Q5T1M5 1219 aa31.74■■■□□ 2.67
LIMCH1-211ENST00000509638 OVOS1Q6IE37 1185 aa31.74■■■□□ 2.67
LIMCH1-211ENST00000509638 TRIM65Q6PJ69 517 aa31.74■■■□□ 2.67
LIMCH1-211ENST00000509638 DEFB123Q8N688 67 aa31.74■■■□□ 2.67
LIMCH1-211ENST00000509638 PDE12Q6L8Q7 609 aaKnown RBP31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 ANKS3Q6ZW76 656 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 LIMS2Q7Z4I7 341 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 EHBP1Q8NDI1 1231 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 NT5C1BQ96P26 610 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 HIDE1A8MVS5 230 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 RAP1GAPP47736 663 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 FANCCQ00597 558 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 ADGRE1Q14246 886 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 PDXDC1Q6P996 788 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 METTL23Q86XA0 190 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 TMEM86AQ8N2M4 240 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 LNX1Q8TBB1 728 aaPredicted RBP31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 KBTBD7Q8WVZ9 684 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 SSX2IPQ9Y2D8 614 aa31.73■■■□□ 2.67
LIMCH1-211ENST00000509638 CXCL14O95715 111 aa31.72■■■□□ 2.67
LIMCH1-211ENST00000509638 SLC9A1P19634 815 aa31.72■■■□□ 2.67
LIMCH1-211ENST00000509638 ZNF280DQ6N043 979 aa31.72■■■□□ 2.67
LIMCH1-211ENST00000509638 DPH6Q7L8W6 267 aa31.72■■■□□ 2.67
LIMCH1-211ENST00000509638 MRPL43Q8N983 215 aaKnown RBP31.72■■■□□ 2.67
LIMCH1-211ENST00000509638 TATDN2Q93075 761 aa31.72■■■□□ 2.67
LIMCH1-211ENST00000509638 ARID3AQ99856 593 aa31.72■■■□□ 2.67
LIMCH1-211ENST00000509638 BCO2Q9BYV7 579 aa31.72■■■□□ 2.67
LIMCH1-211ENST00000509638 SDCBP2Q9H190 292 aa31.72■■■□□ 2.67
LIMCH1-211ENST00000509638 IRAK3Q9Y616 596 aa31.72■■■□□ 2.67
LIMCH1-211ENST00000509638 C2orf71A6NGG8 1288 aa31.71■■■□□ 2.67
LIMCH1-211ENST00000509638 RPL17P18621 184 aaKnown RBP31.71■■■□□ 2.67
LIMCH1-211ENST00000509638 PON1P27169 355 aa31.71■■■□□ 2.67
LIMCH1-211ENST00000509638 UBXN1Q04323 297 aa31.71■■■□□ 2.67
LIMCH1-211ENST00000509638 FILIP1LQ4L180 1135 aa31.71■■■□□ 2.67
LIMCH1-211ENST00000509638 GPR65Q8IYL9 337 aa31.71■■■□□ 2.67
LIMCH1-211ENST00000509638 GAS2L1Q99501 681 aaPredicted RBP31.71■■■□□ 2.67
LIMCH1-211ENST00000509638 MRPL45Q9BRJ2 306 aaKnown RBP31.71■■■□□ 2.67
LIMCH1-211ENST00000509638 MTRRQ9UBK8 725 aa31.71■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms