RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 HEY2Q9UBP5 337 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 RFX7Q2KHR2 1363 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 HOXB6P17509 224 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 PAX7P23759 505 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 TUBA1BP68363 451 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 DLG4P78352 724 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 HPCAP84074 193 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 STK4Q13043 487 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 ZNF211Q13398 564 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 PIGHQ14442 188 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 ANO4Q32M45 955 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 RWDD4Q6NW29 188 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 MZT2AQ6P582 158 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 TUBA1AQ71U36 451 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 C16orf62Q7Z3J2 963 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 NOP9Q86U38 636 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 DGKHQ86XP1 1220 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 STX12Q86Y82 276 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 ABI1Q8IZP0 508 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 KCTD17Q8N5Z5 321 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 RDM1Q8NG50 284 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 C11orf70Q9BRQ4 267 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 HDHD2Q9H0R4 259 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 PCIF1Q9H4Z3 704 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 COL17A1Q9UMD9 1497 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 RIMBP2O15034 1052 aa11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 POLBP06746 335 aa11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 JAK1P23458 1154 aa11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 PSMD4P55036 377 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 USP10Q14694 798 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 LLGL1Q15334 1064 aa11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 C12orf60Q5U649 245 aa11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 USP38Q8NB14 1042 aa11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 SHCBP1Q8NEM2 672 aa11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 ZNF184Q99676 751 aaPredicted RBP11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 TIPINQ9BVW5 301 aa11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 KANSL2Q9H9L4 492 aa11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 EIF3LQ9Y262 564 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 SYCP2Q9BX26 1530 aa11.71□□□□□ -0.54
LIMCH1-208ENST00000508501 C15orf38-AP3S2A0A0A6YYH1 394 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 RAD51BO15315 384 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 NCK2O43639 380 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 CCNA2P20248 432 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 NPEPPSP55786 919 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 XIAPP98170 497 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 TCIRG1Q13488 830 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 SF3B3Q15393 1217 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 DLGAP5Q15398 846 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 DDB1Q16531 1140 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 KRT24Q2M2I5 525 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 NYAP1Q6ZVC0 841 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 ARPINQ7Z6K5 226 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 DPP10Q8N608 796 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 WNK4Q96J92 1243 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 GCNAQ96QF7 691 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 AGPAT1Q99943 283 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 TMEM79Q9BSE2 394 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 INTS2Q9H0H0 1204 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 TMBIM4Q9HC24 238 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 ING3Q9NXR8 418 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 MRPL39Q9NYK5 338 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 SORCS3Q9UPU3 1222 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 ADCY6O43306 1168 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 SKAP2O75563 359 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 NPR3P17342 541 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 RAP1GAPP47736 663 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 LONRF1Q17RB8 773 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 PMF1Q6P1K2 205 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 BARGINQ6ZT62 677 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 ARID3BQ8IVW6 561 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 DHX40Q8IX18 779 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 MOSPD2Q8NHP6 518 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 MYLK2Q9H1R3 596 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 SLC24A2Q9UI40 661 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 L1RE1Q9UN81 338 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 MAGED2Q9UNF1 606 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 PCDHB6Q9Y5E3 794 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 SNX13Q9Y5W8 968 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 RAD54BQ9Y620 910 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 CDHR2Q9BYE9 1310 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 UBE2QL1A1L167 161 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 CD58P19256 250 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 PRCPP42785 496 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 RPL5P46777 297 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 KIAA0408Q6ZU52 694 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 MIGA2Q7L4E1 593 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 FAM160B2Q86V87 743 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 CLVS1Q8IUQ0 354 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 THEM5Q8N1Q8 247 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 PIK3C3Q8NEB9 887 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 RASSF5Q8WWW0 418 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 SKA1Q96BD8 255 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 EFHD2Q96C19 240 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 TASP1Q9H6P5 420 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 MOV10Q9HCE1 1003 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 ARHGEF38Q9NXL2 777 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 CYP39A1Q9NYL5 469 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 GGT7Q9UJ14 662 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 SRGNP10124 158 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 CCDC130P13994 396 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms