RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	HNRNPM	P52272	730 aa	Known RBP eCLIP	4.64	□□□□□ -1.67
CBX3-208	ENST00000497498	NXPH1	P58417	271 aa		4.64	□□□□□ -1.67
CBX3-208	ENST00000497498	KRT85	P78386	507 aa		4.64	□□□□□ -1.67
CBX3-208	ENST00000497498	C1QL2	Q7Z5L3	287 aa		4.64	□□□□□ -1.67
CBX3-208	ENST00000497498	POC1B	Q8TC44	478 aa		4.64	□□□□□ -1.67
CBX3-208	ENST00000497498	HASPIN	Q8TF76	798 aa		4.64	□□□□□ -1.67
CBX3-208	ENST00000497498	COA7	Q96BR5	231 aa		4.64	□□□□□ -1.67
CBX3-208	ENST00000497498	CLPTM1L	Q96KA5	538 aa		4.64	□□□□□ -1.67
CBX3-208	ENST00000497498	CCDC154	A6NI56	674 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	LINC00473	A8K010	186 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	VWC2L	B2RUY7	222 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498		E9PLN8	166 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	FZD9	O00144	591 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	TOR1B	O14657	336 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	PPP3CB	P16298	524 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	ITIH3	Q06033	890 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	SRSF4	Q08170	494 aa	Known RBP	4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	ACAP2	Q15057	778 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	PREPL	Q4J6C6	727 aa	Predicted RBP	4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	TSTD2	Q5T7W7	516 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	SYDE2	Q5VT97	1194 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	PPP4R3A	Q6IN85	833 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	GADL1	Q6ZQY3	521 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	PDSS2	Q86YH6	399 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	AOPEP	Q8N6M6	819 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	SLC17A8	Q8NDX2	589 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	NSUN6	Q8TEA1	469 aa	Known RBP	4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	DPF1	Q92782	380 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	VKORC1	Q9BQB6	163 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	C1QTNF7	Q9BXJ2	289 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	KLC4	Q9NSK0	619 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	SIDT1	Q9NXL6	827 aa	Known RBP	4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	ATP8A1	Q9Y2Q0	1164 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	AOX1	Q06278	1338 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	SPATA31A3	Q5VYP0	1347 aa		4.63	□□□□□ -1.67
CBX3-208	ENST00000497498	MT-CO1	P00395	513 aa		4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	CHRM2	P08172	466 aa		4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	LPO	P22079	712 aa	Predicted RBP	4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	NPTX2	P47972	431 aa		4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	KIAA1614	Q5VZ46	1190 aa		4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	TAPT1	Q6NXT6	567 aa		4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	SCAMP4	Q969E2	229 aa		4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	TRIB1	Q96RU8	372 aa		4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	ADAM21	Q9UKJ8	722 aa		4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	CFAP20	Q9Y6A4	193 aa	Known RBP	4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	WNT6	Q9Y6F9	365 aa		4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	ADGRA2	Q96PE1	1338 aa		4.62	□□□□□ -1.67
CBX3-208	ENST00000497498	MANSC4	A6NHS7	340 aa	Predicted RBP	4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	NT5C1B-RDH14	C9J2C7	533 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	GCOM1	H8Y6P7	765 aa	Predicted RBP	4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	F2RL2	O00254	374 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	PRKCG	P05129	697 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	RPLP2	P05387	115 aa	Known RBP	4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	CELA2A	P08217	269 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	MAL	P21145	153 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	KIF23	Q02241	960 aa	Predicted RBP	4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	DSC2	Q02487	901 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	CCDC93	Q567U6	631 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	FCRLB	Q6BAA4	426 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	FAM9A	Q8IZU1	332 aa	Predicted RBP	4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	B3GALNT2	Q8NCR0	500 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	SCARB1	Q8WTV0	552 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	SMG7	Q92540	1137 aa	Known RBP	4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	KAT5	Q92993	513 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	RFK	Q969G6	155 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	TEKT5	Q96M29	485 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	HAPLN3	Q96S86	360 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	OSBPL9	Q96SU4	736 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	SMO	Q99835	787 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	MAN1C1	Q9NR34	630 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	RLIM	Q9NVW2	624 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498	TRHDE	Q9UKU6	1024 aa		4.61	□□□□□ -1.67
CBX3-208	ENST00000497498		A0A0B4J269	797 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	XPOT	O43592	962 aa	Known RBP	4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	MYBL2	P10244	700 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	CYP2C19	P33261	490 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	FXR1	P51114	621 aa	Known RBP eCLIP	4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	SNAPC2	Q13487	334 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	TUBB3	Q13509	450 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	MTMR1	Q13613	665 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	PCBP2	Q15366	365 aa	Known RBP eCLIP	4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	KHDC1	Q4VXA5	237 aa	Known RBP	4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	AMIGO2	Q86SJ2	522 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	TTC7B	Q86TV6	843 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	PBK	Q96KB5	322 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	VRK1	Q99986	396 aa	Predicted RBP	4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	ALG8	Q9BVK2	526 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	SLC29A3	Q9BZD2	475 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	SPC25	Q9HBM1	224 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	ETAA1	Q9NY74	926 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	RNF7	Q9UBF6	113 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	SERPINB13	Q9UIV8	391 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	ST3GAL5	Q9UNP4	418 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	MRFAP1	Q9Y605	127 aa		4.6	□□□□□ -1.67
CBX3-208	ENST00000497498	SHTN1	A0MZ66	631 aa		4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	PRSS29P	A6NIE9	313 aa		4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	POLRMT	O00411	1230 aa	Known RBP	4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	GABRD	O14764	452 aa		4.59	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms