RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	GAS2	O43903	313 aa	Known RBP	4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	B4GALT4	O60513	344 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	SLC25A27	O95847	323 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	FAM87A	P0C7U9	286 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	CYP2C9	P11712	490 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	FCER1A	P12319	257 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	EEF2	P13639	858 aa	Known RBP	4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	AKR1A1	P14550	325 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	ATP5J	P18859	108 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	CCND1	P24385	295 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	MAP4	P27816	1152 aa	Known RBP	4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	NBL1	P41271	181 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	HTR3A	P46098	478 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	SCAND1	P57086	179 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	PHC1	P78364	1004 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	NKX3-2	P78367	333 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	BEX3	Q00994	111 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	GPNMB	Q14956	572 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	UBE3C	Q15386	1083 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	CLUL1	Q15846	466 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	FAM47C	Q5HY64	1035 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	TMEM63B	Q5T3F8	832 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	PGM2L1	Q6PCE3	622 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	CTR9	Q6PD62	1173 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	MAMDC4	Q6UXC1	1216 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	DEFB128	Q7Z7B8	93 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	FBXL6	Q8N531	539 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	E2F7	Q96AV8	911 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	LRGUK	Q96M69	825 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	STRBP	Q96SI9	672 aa	Known RBP	4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	ELF4	Q99607	663 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	TEX13B	Q9BXU2	312 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	PTPRH	Q9HD43	1115 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	ATP8A2	Q9NTI2	1148 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	HOXC10	Q9NYD6	342 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	USP25	Q9UHP3	1055 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	RIPK3	Q9Y572	518 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	SPO11	Q9Y5K1	396 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	DDX49	Q9Y6V7	483 aa	Known RBP	4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	SCN5A	Q14524	2016 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	ZNF536	O15090	1300 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	ELP1	O95163	1332 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	ASH1L	Q9NR48	2969 aa	Known RBP	4.96	□□□□□ -1.61
VPS52-222	ENST00000495981		A0A0U1RQG5	324 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	CCDC189	A1A4V9	331 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	FAM47E-STBD1	D6RA91	191 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	GNB5	O14775	395 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	SART1	O43290	800 aa	Known RBP	4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	CFB	P00751	764 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	GSTM1	P09488	218 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	GLB1	P16278	677 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	SLC9A1	P19634	815 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	TPP2	P29144	1249 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	COPB2	P35606	906 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	NOP2	P46087	812 aa	Known RBP	4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	JAM2	P57087	298 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	PSMC6	P62333	389 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	DEFB103A	P81534	67 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	ZXDA	P98168	799 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	PLS1	Q14651	629 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	ARHGAP44	Q17R89	818 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	HSP90AB4P	Q58FF6	505 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	TCEAL5	Q5H9L2	206 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	RRP12	Q5JTH9	1297 aa	Known RBP	4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	GPR158	Q5T848	1215 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	TSHZ3	Q63HK5	1081 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	IQCE	Q6IPM2	695 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	ERAP2	Q6P179	960 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	CXCL17	Q6UXB2	119 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	OSTM1	Q86WC4	334 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	RASSF3	Q86WH2	238 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	CPNE8	Q86YQ8	564 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	NOSTRIN	Q8IVI9	506 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	FAM20C	Q8IXL6	584 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	SHISA5	Q8N114	240 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	CLASRP	Q8N2M8	674 aa	Known RBP	4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	MSL3	Q8N5Y2	521 aa	Known RBP	4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	PIWIL2	Q8TC59	973 aa	Known RBP	4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	NUP133	Q8WUM0	1156 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	MYRFL	Q96LU7	910 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	CCDC17	Q96LX7	622 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	TEKT5	Q96M29	485 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	PTCHD1	Q96NR3	888 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	TAAR9	Q96RI9	348 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	SLF1	Q9BQI6	1058 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	C17orf80	Q9BSJ5	609 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	BOC	Q9BWV1	1114 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	CEP41	Q9BYV8	373 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	BOLA2	Q9H3K6	86 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	ZMAT4	Q9H898	229 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	CCM2L	Q9NUG4	571 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	MKS1	Q9NXB0	559 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	LMCD1	Q9NZU5	365 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	INTU	Q9ULD6	942 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	SYNPO2	Q9UMS6	1093 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	DNM3	Q9UQ16	869 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	CEP295	Q9C0D2	2601 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	NAV2	Q8IVL1	2488 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	SALL3	Q9BXA9	1300 aa		4.96	□□□□□ -1.62
VPS52-222	ENST00000495981	SI	P14410	1827 aa		4.95	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms