RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 C5orf67F2Z3F1 127 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 P4HA2O15460 535 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 B4GALT3O60512 393 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 LPXNO60711 386 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 ARHGEF15O94989 841 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 KIF4AO95239 1232 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 SERPINC1P01008 464 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 P4HA1P13674 534 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 ATICP31939 592 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 SSTR3P32745 418 aaPredicted RBP11.07□□□□□ -0.64
SKA1-204ENST00000488454 FMO5P49326 533 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 LILRA4P59901 499 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 MYL7Q01449 175 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 UBE3AQ05086 875 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 HABP4Q5JVS0 413 aaKnown RBP11.07□□□□□ -0.64
SKA1-204ENST00000488454 FKBP15Q5T1M5 1219 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 ZNF697Q5TEC3 545 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 DDX53Q86TM3 631 aaKnown RBP11.07□□□□□ -0.64
SKA1-204ENST00000488454 RNF214Q8ND24 703 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 FBXL13Q8NEE6 735 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 MICAL1Q8TDZ2 1067 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 TAF4BQ92750 862 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 VPS16Q9H269 839 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 NDST4Q9H3R1 872 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 RAB20Q9NX57 234 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 TAB2Q9NYJ8 693 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 SIX4Q9UIU6 781 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 SSX2IPQ9Y2D8 614 aa11.07□□□□□ -0.64
SKA1-204ENST00000488454 KPNA7A9QM74 516 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 H3BNC9 293 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 PMM2O15305 246 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 HUS1O60921 280 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 HLA-DRAP01903 254 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 LINC00271P0C7V0 271 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 ZNF18P17022 549 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 CA8P35219 290 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 MYL6P60660 151 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 TNNC1P63316 161 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 KRT31Q15323 416 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 PTPROQ16827 1216 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 ZNF699Q32M78 642 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 CBWD6Q4V339 395 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 TIGD5Q53EQ6 642 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 CBWD3Q5JTY5 395 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 CBWD5Q5RIA9 395 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 FAM171A1Q5VUB5 890 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 FUT10Q6P4F1 479 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 C15orf39Q6ZRI6 1047 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 TMC7Q7Z402 723 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 METTL23Q86XA0 190 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 CEP57Q86XR8 500 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 APPL2Q8NEU8 664 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 POF1BQ8WVV4 589 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 FAM84AQ96KN4 292 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 MMS19Q96T76 1030 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 ALG13Q9NP73 1137 aaKnown RBP11.06□□□□□ -0.64
SKA1-204ENST00000488454 MARCH5Q9NX47 278 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 NXF1Q9UBU9 619 aaKnown RBP11.06□□□□□ -0.64
SKA1-204ENST00000488454 LIMA1Q9UHB6 759 aaKnown RBP11.06□□□□□ -0.64
SKA1-204ENST00000488454 DSEQ9UL01 958 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 LZTS1Q9Y250 596 aa11.06□□□□□ -0.64
SKA1-204ENST00000488454 LRRC10BA6NIK2 292 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 F8W810 466 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 CYB561D2O14569 222 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 PPEF2O14830 753 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 VNN1O95497 513 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 STAU1O95793 577 aaKnown RBP11.05□□□□□ -0.64
SKA1-204ENST00000488454 SOD2P04179 222 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 ITGB1P05556 798 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 URODP06132 367 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 ODC1P11926 461 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 BRCC3P46736 316 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 COPB1P53618 953 aaKnown RBP11.05□□□□□ -0.64
SKA1-204ENST00000488454 USP41Q3LFD5 358 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 WDR72Q3MJ13 1102 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 ZNF667Q5HYK9 610 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 PDE12Q6L8Q7 609 aaKnown RBP11.05□□□□□ -0.64
SKA1-204ENST00000488454 PDXDC1Q6P996 788 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.05□□□□□ -0.64
SKA1-204ENST00000488454 GBP6Q6ZN66 633 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 TMEM173Q86WV6 379 aaPredicted RBP11.05□□□□□ -0.64
SKA1-204ENST00000488454 VPS52Q8N1B4 723 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 TMEM130Q8N3G9 435 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 C3orf58Q8NDZ4 430 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 SPPL3Q8TCT6 385 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 TAS1R2Q8TE23 839 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 SUSD3Q96L08 255 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 SENP8Q96LD8 212 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 GPR62Q9BZJ7 368 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 LMAN2LQ9H0V9 348 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 NGRNQ9NPE2 291 aaKnown RBP11.05□□□□□ -0.64
SKA1-204ENST00000488454 MRPL17Q9NRX2 175 aaKnown RBP11.05□□□□□ -0.64
SKA1-204ENST00000488454 COQ4Q9Y3A0 265 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 SNX9Q9Y5X1 595 aa11.05□□□□□ -0.64
SKA1-204ENST00000488454 COL4A6Q14031 1691 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 RANBP2P49792 3224 aaKnown RBP11.04□□□□□ -0.64
SKA1-204ENST00000488454 GTPBP10A4D1E9 387 aaKnown RBP11.04□□□□□ -0.64
SKA1-204ENST00000488454 H7C4K7 107 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 I3L4J1 428 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 SOX1O00570 391 aaPredicted RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms