RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 PPP1R3GB7ZBB8 358 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 H3BQ06 376 aaPredicted RBP15.74■□□□□ 0.11
LIMS3-205ENST00000487150 PPEF2O14830 753 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 LINC01565O15544 149 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 CLSTN1O94985 981 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 FAM163BP0C2L3 166 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 CPB1P15086 417 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 TRIM21P19474 475 aaKnown RBP15.74■□□□□ 0.11
LIMS3-205ENST00000487150 BMP6P22004 513 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 HOXA9P31269 272 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 ELF1P32519 619 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 OR1D2P34982 312 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 TNNC1P63316 161 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 UVSSAQ2YD98 709 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 ZACNQ401N2 412 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 TTI2Q6NXR4 508 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 C15orf39Q6ZRI6 1047 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 FILIP1Q7Z7B0 1213 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 CXorf38Q8TB03 319 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 GPT2Q8TD30 523 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 POP1Q99575 1024 aaKnown RBP15.74■□□□□ 0.11
LIMS3-205ENST00000487150 CLSTN3Q9BQT9 956 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 VRTNQ9H8Y1 702 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 TMEM8AQ9HCN3 771 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 MAN1C1Q9NR34 630 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 CLEC1BQ9P126 229 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 FBXL5Q9UKA1 691 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 FBXW11Q9UKB1 542 aa15.74■□□□□ 0.11
LIMS3-205ENST00000487150 SPTLC1O15269 473 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 TGM5O43548 720 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 N4BP1O75113 896 aaKnown RBP15.73■□□□□ 0.11
LIMS3-205ENST00000487150 POU2F2P09086 479 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 HNRNPA1P09651 372 aaKnown RBP eCLIP15.73■□□□□ 0.11
LIMS3-205ENST00000487150 PRKCSHP14314 528 aaPredicted RBP15.73■□□□□ 0.11
LIMS3-205ENST00000487150 EPCAMP16422 314 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 PCSK1P29120 753 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 LTBRP36941 435 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 PIK3CAP42336 1068 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 LHX1P48742 406 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 MYL7Q01449 175 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 TSPY1Q01534 308 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 NCOA4Q13772 614 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 ZNF699Q32M78 642 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 CCDC40Q4G0X9 1142 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 PTCRAQ6ISU1 281 aaPredicted RBP15.73■□□□□ 0.11
LIMS3-205ENST00000487150 SASS6Q6UVJ0 657 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 RBM43Q6ZSC3 357 aaKnown RBP15.73■□□□□ 0.11
LIMS3-205ENST00000487150 FRMD5Q7Z6J6 570 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 KREMEN2Q8NCW0 462 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 VN1R2Q8NFZ6 395 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 ZNF461Q8TAF7 563 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 DNAI2Q9GZS0 605 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 ADAM7Q9H2U9 754 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 SNX9Q9Y5X1 595 aa15.73■□□□□ 0.11
LIMS3-205ENST00000487150 TRIM49BA6NDI0 452 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 TBC1D4O60343 1298 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 XYLBO75191 536 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 CCDC192P0DO97 292 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 CD44P16070 742 aaKnown RBP15.72■□□□□ 0.11
LIMS3-205ENST00000487150 RPL17P18621 184 aaKnown RBP15.72■□□□□ 0.11
LIMS3-205ENST00000487150 ERCC5P28715 1186 aaPredicted RBP15.72■□□□□ 0.11
LIMS3-205ENST00000487150 MTHFRP42898 656 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 MXI1P50539 228 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 PMS1P54277 932 aaKnown RBP15.72■□□□□ 0.11
LIMS3-205ENST00000487150 NLRP12P59046 1061 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 MCCD1P59942 119 aaPredicted RBP15.72■□□□□ 0.11
LIMS3-205ENST00000487150 ROR1Q01973 937 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 CETN1Q12798 172 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 MAPK8IP2Q13387 824 aaPredicted RBP15.72■□□□□ 0.11
LIMS3-205ENST00000487150 TPD52L1Q16890 204 aaPredicted RBP15.72■□□□□ 0.11
LIMS3-205ENST00000487150 SGSM1Q2NKQ1 1148 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 DCAF17Q5H9S7 520 aaPredicted RBP15.72■□□□□ 0.11
LIMS3-205ENST00000487150 TCERG1LQ5VWI1 586 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 TDRD10Q5VZ19 366 aaKnown RBP15.72■□□□□ 0.11
LIMS3-205ENST00000487150 KRT39Q6A163 491 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 LILRA6Q6PI73 481 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 SV2AQ7L0J3 742 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 PALB2Q86YC2 1186 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 FAM114A1Q8IWE2 563 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 ADGRF2Q8IZF7 708 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 C2orf15Q8WU43 125 aaKnown RBP15.72■□□□□ 0.11
LIMS3-205ENST00000487150 FAXDC2Q96IV6 333 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 PRDM6Q9NQX0 595 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 HSFX1Q9UBD0 423 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 PRKAG3Q9UGI9 489 aa15.72■□□□□ 0.11
LIMS3-205ENST00000487150 AFF4Q9UHB7 1163 aaKnown RBP15.72■□□□□ 0.11
LIMS3-205ENST00000487150 PDCD11Q14690 1871 aaKnown RBP15.71■□□□□ 0.11
LIMS3-205ENST00000487150 GRXCR2A6NFK2 248 aa15.71■□□□□ 0.11
LIMS3-205ENST00000487150 PRRG1O14668 218 aa15.71■□□□□ 0.11
LIMS3-205ENST00000487150 C4BPAP04003 597 aaKnown RBP15.71■□□□□ 0.11
LIMS3-205ENST00000487150 ATF2P15336 505 aa15.71■□□□□ 0.11
LIMS3-205ENST00000487150 IGFBP6P24592 240 aaPredicted RBP15.71■□□□□ 0.11
LIMS3-205ENST00000487150 TFF2Q03403 129 aa15.71■□□□□ 0.11
LIMS3-205ENST00000487150 DLX2Q07687 328 aaPredicted RBP15.71■□□□□ 0.11
LIMS3-205ENST00000487150 PLD1Q13393 1074 aa15.71■□□□□ 0.11
LIMS3-205ENST00000487150 MAPRE1Q15691 268 aaKnown RBP15.71■□□□□ 0.11
LIMS3-205ENST00000487150 SMAD2Q15796 467 aaKnown RBP15.71■□□□□ 0.11
LIMS3-205ENST00000487150 ZNF667Q5HYK9 610 aa15.71■□□□□ 0.11
LIMS3-205ENST00000487150 PPM1LQ5SGD2 360 aa15.71■□□□□ 0.11
LIMS3-205ENST00000487150 ATAT1Q5SQI0 421 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms