RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 LMBRD2Q68DH5 695 aaPredicted RBP17.12■□□□□ 0.33
UPF3A-208ENST00000484246 C15orf39Q6ZRI6 1047 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 LIMS2Q7Z4I7 341 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 CSGALNACT2Q8N6G5 542 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 FAM84AQ96KN4 292 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 VRTNQ9H8Y1 702 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 ZDHHC7Q9NXF8 308 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 PRKAG3Q9UGI9 489 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 USP15Q9Y4E8 981 aaPredicted RBP17.12■□□□□ 0.33
UPF3A-208ENST00000484246 CDY1Q9Y6F8 540 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 TRIP11Q15643 1979 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 XIRP2A4UGR9 3374 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 PPP1R3GB7ZBB8 358 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 CETN3O15182 167 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 SLC16A3O15427 465 aaKnown RBP17.11■□□□□ 0.33
UPF3A-208ENST00000484246 ABLIM3O94929 683 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 CD44P16070 742 aaKnown RBP17.11■□□□□ 0.33
UPF3A-208ENST00000484246 OR1D2P34982 312 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 PMS1P54277 932 aaKnown RBP17.11■□□□□ 0.33
UPF3A-208ENST00000484246 FKBP3Q00688 224 aaKnown RBP17.11■□□□□ 0.33
UPF3A-208ENST00000484246 ADAM9Q13443 819 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 CTXN3Q4LDR2 81 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 C1orf220Q5T0J3 134 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 TPGS2Q68CL5 300 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 OVOS1Q6IE37 1185 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 FAM186BQ8IYM0 893 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 KREMEN2Q8NCW0 462 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 ZNF461Q8TAF7 563 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 ZNF516Q92618 1163 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 NECTIN4Q96NY8 510 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 NUP62CLQ9H1M0 184 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 VWA8A3KMH1 1905 aa17.11■□□□□ 0.33
UPF3A-208ENST00000484246 WDR27A2RRH5 827 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 CYB561D2O14569 222 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 ZMYND10O75800 440 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 C4BPAP04003 597 aaKnown RBP17.1■□□□□ 0.33
UPF3A-208ENST00000484246 IL9P15248 144 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 ATICP31939 592 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 BFSP1Q12934 665 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 MYO1EQ12965 1108 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 CLUL1Q15846 466 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 UVSSAQ2YD98 709 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 ZACNQ401N2 412 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 ANKRD40Q6AI12 368 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 CES5AQ6NT32 575 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 TTI2Q6NXR4 508 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 DPH6Q7L8W6 267 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 GPR149Q86SP6 731 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 PALB2Q86YC2 1186 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 TMEM86AQ8N2M4 240 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 TOP6BLQ8N6T0 577 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 POP1Q99575 1024 aaKnown RBP17.1■□□□□ 0.33
UPF3A-208ENST00000484246 XYLT2Q9H1B5 865 aa17.1■□□□□ 0.33
UPF3A-208ENST00000484246 BICDL2A1A5D9 508 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 MBD3O95983 291 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 KRT19P08727 400 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 HNRNPA1P09651 372 aaKnown RBP eCLIP17.09■□□□□ 0.33
UPF3A-208ENST00000484246 FAM163BP0C2L3 166 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 EPB41P11171 864 aaKnown RBP17.09■□□□□ 0.33
UPF3A-208ENST00000484246 MTHFRP42898 656 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 VAMP7P51809 220 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 CBX2Q14781 532 aaPredicted RBP17.09■□□□□ 0.33
UPF3A-208ENST00000484246 CAMK4Q16566 473 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 LIN9Q5TKA1 542 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 TDRD10Q5VZ19 366 aaKnown RBP17.09■□□□□ 0.33
UPF3A-208ENST00000484246 SCARA3Q6AZY7 606 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 GPT2Q8TD30 523 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 ADAMTS19Q8TE59 1207 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 HPDLQ96IR7 371 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 RIPOR3Q96MK2 946 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 CEP63Q96MT8 703 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 RTP3Q9BQQ7 232 aa17.09■□□□□ 0.33
UPF3A-208ENST00000484246 AFF4Q9UHB7 1163 aaKnown RBP17.09■□□□□ 0.33
UPF3A-208ENST00000484246 R3HCC1Q9Y3T6 440 aaKnown RBP17.09■□□□□ 0.33
UPF3A-208ENST00000484246 TIMM13Q9Y5L4 95 aaPredicted RBP17.09■□□□□ 0.33
UPF3A-208ENST00000484246 TRIM49BA6NDI0 452 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 BIN1O00499 593 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 C8AP07357 584 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 KRT13P13646 458 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 ATF2P15336 505 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 GTF2H1P32780 548 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 DLG4P78352 724 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 ZP2Q05996 745 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 PAK1Q13153 545 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 GPR17Q13304 367 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 RARS2Q5T160 578 aaKnown RBP17.08■□□□□ 0.32
UPF3A-208ENST00000484246 WSCD1Q658N2 575 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 RBM43Q6ZSC3 357 aaKnown RBP17.08■□□□□ 0.32
UPF3A-208ENST00000484246 CCDC149Q6ZUS6 474 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 METTL23Q86XA0 190 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 GLYCTKQ8IVS8 523 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 ADHFE1Q8IWW8 467 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 TCEAL8Q8IYN2 117 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 PDCL2Q8N4E4 241 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 SYAP1Q96A49 352 aaPredicted RBP17.08■□□□□ 0.32
UPF3A-208ENST00000484246 ZNF707Q96C28 371 aaPredicted RBP17.08■□□□□ 0.32
UPF3A-208ENST00000484246 DUSP9Q99956 384 aaKnown RBP17.08■□□□□ 0.32
UPF3A-208ENST00000484246 HSFX1Q9UBD0 423 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 L1RE1Q9UN81 338 aa17.08■□□□□ 0.32
UPF3A-208ENST00000484246 C19orf67A6NJJ6 358 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms