RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 C19orf67A6NJJ6 358 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 CYB561D2O14569 222 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 HCRTO43612 131 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 AKAP3O75969 853 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 ABLIM3O94929 683 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 OAZ2O95190 189 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 KRT19P08727 400 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 TMEM191BP0C7N4 346 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 SRGAP2BP0DMP2 458 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 TAF6P49848 677 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 CREMQ03060 361 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 BFSP1Q12934 665 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 CBX2Q14781 532 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-213ENST00000481019 CT47A1Q5JQC4 288 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-213ENST00000481019 WSCD1Q658N2 575 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 CEP135Q66GS9 1140 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 PDXDC1Q6P996 788 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 RNF19BQ6ZMZ0 732 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 TRAPPC11Q7Z392 1133 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 GPR149Q86SP6 731 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 OSTM1Q86WC4 334 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 WDR49Q8IV35 697 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 ADHFE1Q8IWW8 467 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 ADSSL1Q8N142 457 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 OR10T2Q8NGX3 314 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 GOLGA5Q8TBA6 731 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 PARD3BQ8TEW8 1205 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 CRISPLD1Q9H336 500 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 SFXN1Q9H9B4 322 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 ITGA11Q9UKX5 1188 aa13.18□□□□□ -0.3
PTPRF-213ENST00000481019 KPNA7A9QM74 516 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 PPP1R3GB7ZBB8 358 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 H7C4K7 107 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 NRG2O14511 850 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-213ENST00000481019 CALUO43852 315 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-213ENST00000481019 ZMYND10O75800 440 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 PAPLNO95428 1278 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 VNN1O95497 513 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 CYP11A1P05108 521 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 TYMPP19971 482 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 NR2F2P24468 414 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 YWHAHQ04917 246 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-213ENST00000481019 ITIH3Q06033 890 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 MORC3Q14149 939 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 STX1AQ16623 288 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 NFIL3Q16649 462 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 CCDC142Q17RM4 750 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 DUOXA2Q1HG44 320 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 COBLL1Q53SF7 1204 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 TDRD10Q5VZ19 366 aaKnown RBP13.17□□□□□ -0.3
PTPRF-213ENST00000481019 ANKRD40Q6AI12 368 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 OVOS1Q6IE37 1185 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 ZNF280DQ6N043 979 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 PDCL2Q8N4E4 241 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 APPL2Q8NEU8 664 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 CMASQ8NFW8 434 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-213ENST00000481019 SLC7A14Q8TBB6 771 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 CACTINQ8WUQ7 758 aaKnown RBP13.17□□□□□ -0.3
PTPRF-213ENST00000481019 ANKRD36BP1Q96IX9 119 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 L1RE1Q9UN81 338 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-213ENST00000481019 NOTCH4Q99466 2003 aa13.17□□□□□ -0.3
PTPRF-213ENST00000481019 LOC730098B7Z3J9 87 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 CCL16O15467 120 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 N4BP1O75113 896 aaKnown RBP13.16□□□□□ -0.3
PTPRF-213ENST00000481019 C1RP00736 705 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 TNNC2P02585 160 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 C4BPAP04003 597 aaKnown RBP13.16□□□□□ -0.3
PTPRF-213ENST00000481019 C8AP07357 584 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 TRIM49P0CI25 452 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 TRIM49CP0CI26 452 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 ODC1P11926 461 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 TNNI1P19237 187 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 PPP1R2P41236 205 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 CLDN10P78369 228 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 NTHL1P78549 312 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 RBP5P82980 135 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 MYBPC2Q14324 1141 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 SURF1Q15526 300 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 SV2CQ496J9 727 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 CENPPQ6IPU0 288 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 LRRTM3Q86VH5 581 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 ZC3H3Q8IXZ2 948 aaKnown RBP13.16□□□□□ -0.3
PTPRF-213ENST00000481019 GJD3Q8N144 294 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 TTC9BQ8N6N2 239 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 LRRC52Q8N7C0 313 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 ZNF461Q8TAF7 563 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 HDAC7Q8WUI4 952 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 ANP32BQ92688 251 aaKnown RBP13.16□□□□□ -0.3
PTPRF-213ENST00000481019 RPGRIP1Q96KN7 1286 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 PGLYRP2Q96PD5 576 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 FNBP1Q96RU3 617 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 PHF7Q9BWX1 381 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-213ENST00000481019 PLEKHA4Q9H4M7 779 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 HCFC1R1Q9NWW0 138 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 NME7Q9Y5B8 376 aa13.16□□□□□ -0.3
PTPRF-213ENST00000481019 SPDYE4A6NLX3 237 aa13.15□□□□□ -0.3
PTPRF-213ENST00000481019 C2CD4DB7Z1M9 353 aa13.15□□□□□ -0.3
PTPRF-213ENST00000481019 LRRN2O75325 713 aa13.15□□□□□ -0.3
PTPRF-213ENST00000481019 MYL6P60660 151 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms