RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 TRPV5Q9NQA5 729 aa14.38□□□□□ -0.11
VCL-205ENST00000478896 RAB23Q9ULC3 237 aa14.38□□□□□ -0.11
VCL-205ENST00000478896 MED19A0JLT2 244 aaPredicted RBP14.37□□□□□ -0.11
VCL-205ENST00000478896 MTMR11A4FU01 709 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 DPYSL4O14531 572 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 PPEF2O14830 753 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 SLC26A4O43511 780 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 LILRB5O75023 590 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 VNN2O95498 520 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 TYMPP19971 482 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 SCP2P22307 547 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 CCNE1P24864 410 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 KPNA1P52294 538 aaPredicted RBP14.37□□□□□ -0.11
VCL-205ENST00000478896 NRLP54845 237 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 GPR17Q13304 367 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 MYBPC2Q14324 1141 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 ZBTB6Q15916 424 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 RSPO4Q2I0M5 234 aaPredicted RBP14.37□□□□□ -0.11
VCL-205ENST00000478896 JADE1Q6IE81 842 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 TMC8Q8IU68 726 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 CD302Q8IX05 232 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 GPR161Q8N6U8 529 aaKnown RBP14.37□□□□□ -0.11
VCL-205ENST00000478896 FAM200AQ8TCP9 573 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 TSPAN18Q96SJ8 248 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 DNAJC25Q9H1X3 360 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 CRISPLD1Q9H336 500 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 ATXN3LQ9H3M9 355 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 TRPV4Q9HBA0 871 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 USP18Q9UMW8 372 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 SMC3Q9UQE7 1217 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 SLC27A5Q9Y2P5 690 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 GVINP1Q7Z2Y8 2422 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 NCANO14594 1321 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 DCHS1Q96JQ0 3298 aa14.37□□□□□ -0.11
VCL-205ENST00000478896 SLC38A8A6NNN8 435 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 SOAT2O75908 522 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 PIGRP01833 764 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 NFICP08651 508 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 PLCG1P19174 1290 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 ABCD1P33897 745 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 LILRA4P59901 499 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 MCM6Q14566 821 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 TMEM132DQ14C87 1099 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 ARHGAP15Q53QZ3 475 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 STXBP5Q5T5C0 1151 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 SPATA1Q5VX52 437 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 C1orf228Q6PIY5 440 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 ITIH5Q86UX2 942 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 TTC9BQ8N6N2 239 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 ATAD1Q8NBU5 361 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 NELL1Q92832 810 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 MSANTD3Q96H12 275 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 SENP8Q96LD8 212 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 GCNAQ96QF7 691 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 TMEM209Q96SK2 561 aa14.36□□□□□ -0.11
VCL-205ENST00000478896 SEPT5Q99719 369 aaPredicted RBP14.36□□□□□ -0.11
VCL-205ENST00000478896 EP300Q09472 2414 aaPredicted RBP14.35□□□□□ -0.11
VCL-205ENST00000478896 TULP1O00294 542 aaPredicted RBP14.35□□□□□ -0.11
VCL-205ENST00000478896 CHADO15335 359 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 FAM189A1O60320 539 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 FGF19O95750 216 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 BMP15O95972 392 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 SDHBP21912 280 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 GABRR2P28476 465 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 ZNF131P52739 623 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 LRRC32Q14392 662 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 VEPH1Q14D04 833 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 KARSQ15046 597 aaKnown RBP14.35□□□□□ -0.11
VCL-205ENST00000478896 TAF12Q16514 161 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 LPAL2Q16609 132 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 MGAT5BQ3V5L5 792 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 GPR158Q5T848 1215 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 C9orf57Q5W0N0 161 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 ADALQ6DHV7 355 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 CENPPQ6IPU0 288 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 PRR23BQ6ZRT6 265 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 DNAJB7Q7Z6W7 309 aaPredicted RBP14.35□□□□□ -0.11
VCL-205ENST00000478896 GPIHBP1Q8IV16 184 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 ARID3BQ8IVW6 561 aaPredicted RBP14.35□□□□□ -0.11
VCL-205ENST00000478896 LARP4BQ92615 738 aaKnown RBP14.35□□□□□ -0.11
VCL-205ENST00000478896 RAD54LQ92698 747 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 KCNN1Q92952 543 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 PSMG2Q969U7 264 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 LPIN3Q9BQK8 851 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 LRRC3Q9BY71 257 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 C8orf33Q9H7E9 229 aaPredicted RBP14.35□□□□□ -0.11
VCL-205ENST00000478896 UPF2Q9HAU5 1272 aaKnown RBP14.35□□□□□ -0.11
VCL-205ENST00000478896 BLOC1S4Q9NUP1 217 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 DLL3Q9NYJ7 618 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 CPSF3Q9UKF6 684 aaKnown RBP14.35□□□□□ -0.11
VCL-205ENST00000478896 CDV3Q9UKY7 258 aaKnown RBP14.35□□□□□ -0.11
VCL-205ENST00000478896 ASB3Q9Y575 518 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 OTOGLQ3ZCN5 2332 aa14.35□□□□□ -0.11
VCL-205ENST00000478896 SCN1AP35498 2009 aa14.34□□□□□ -0.11
VCL-205ENST00000478896 A0A0B4J269 797 aa14.34□□□□□ -0.11
VCL-205ENST00000478896 ARNTLO00327 626 aa14.34□□□□□ -0.11
VCL-205ENST00000478896 CHRNB1P11230 501 aa14.34□□□□□ -0.11
VCL-205ENST00000478896 PAX3P23760 479 aa14.34□□□□□ -0.11
VCL-205ENST00000478896 NMT1P30419 496 aaKnown RBP14.34□□□□□ -0.11
VCL-205ENST00000478896 LONP1P36776 959 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms