RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 EPHA5P54756 1037 aa15.27■□□□□ 0.04
UPF3A-204ENST00000475218 GPR17Q13304 367 aa15.27■□□□□ 0.04
UPF3A-204ENST00000475218 OVOS1Q6IE37 1185 aa15.27■□□□□ 0.04
UPF3A-204ENST00000475218 HSCBQ8IWL3 235 aa15.27■□□□□ 0.04
UPF3A-204ENST00000475218 ZSWIM3Q96MP5 696 aa15.27■□□□□ 0.04
UPF3A-204ENST00000475218 ZNF396Q96N95 335 aaPredicted RBP15.27■□□□□ 0.04
UPF3A-204ENST00000475218 TNMDQ9H2S6 317 aa15.27■□□□□ 0.04
UPF3A-204ENST00000475218 DPP3Q9NY33 737 aa15.27■□□□□ 0.04
UPF3A-204ENST00000475218 NCANO14594 1321 aa15.27■□□□□ 0.03
UPF3A-204ENST00000475218 OR6C75A6NL08 312 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 COL4A2P08572 1712 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 CASP1P29466 404 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 CENPPQ6IPU0 288 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 BRSK2Q8IWQ3 736 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 ATAD1Q8NBU5 361 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 DHX58Q96C10 678 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 TBC1D17Q9HA65 648 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 ARHGEF3Q9NR81 526 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 DLGAP2Q9P1A6 1054 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 MAFFQ9ULX9 164 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 PCDHB13Q9Y5F0 798 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 TCHHQ07283 1943 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 ZFHX2Q9C0A1 2572 aaPredicted RBP15.26■□□□□ 0.03
UPF3A-204ENST00000475218 MTMR11A4FU01 709 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 GOLGA8IPA6NC78 632 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 SHISA7A6NL88 538 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 GOLGA8JA6NMD2 632 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 ODC1P11926 461 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 GARTP22102 1010 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 CDR1P51861 262 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 EHHADHQ08426 723 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 DUSP4Q13115 394 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 MYBPC2Q14324 1141 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 POSTNQ15063 836 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 TANGO2Q6ICL3 276 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 CNNM4Q6P4Q7 775 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 MTSS1LQ765P7 747 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 EPM2AIP1Q7L775 607 aaPredicted RBP15.26■□□□□ 0.03
UPF3A-204ENST00000475218 TMC8Q8IU68 726 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 CCDC105Q8IYK2 499 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 C1orf127Q8N9H9 656 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 SPRYD3Q8NCJ5 442 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 CHAMP1Q96JM3 812 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 GDE1Q9NZC3 331 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 PCDHA7Q9UN72 937 aa15.26■□□□□ 0.03
UPF3A-204ENST00000475218 PTPRJQ12913 1337 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 SOAT2O75908 522 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 GLULP15104 373 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 GJA1P17302 382 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 FAM78AQ5JUQ0 283 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 PHLDB3Q6NSJ2 640 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 USP37Q86T82 979 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 LRRTM3Q86VH5 581 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 OXCT2Q9BYC2 517 aaPredicted RBP15.25■□□□□ 0.03
UPF3A-204ENST00000475218 PCIF1Q9H4Z3 704 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 EXOC7Q9UPT5 735 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 SLC27A5Q9Y2P5 690 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 ZDHHC9Q9Y397 364 aa15.25■□□□□ 0.03
UPF3A-204ENST00000475218 LRRN2O75325 713 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 ECI2O75521 394 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 MICAL2O94851 1124 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 IL18RAPO95256 599 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 STARD6P59095 220 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 DNM1Q05193 864 aaKnown RBP15.24■□□□□ 0.03
UPF3A-204ENST00000475218 ALCAMQ13740 583 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 WSCD1Q658N2 575 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 CCDC65Q8IXS2 484 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 SHKBP1Q8TBC3 707 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 ANP32EQ9BTT0 268 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 DDX23Q9BUQ8 820 aaKnown RBP15.24■□□□□ 0.03
UPF3A-204ENST00000475218 FOXQ1Q9C009 403 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 ZCWPW1Q9H0M4 648 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 CUEDC2Q9H467 287 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 RBAKQ9NYW8 714 aaPredicted RBP15.24■□□□□ 0.03
UPF3A-204ENST00000475218 SIX4Q9UIU6 781 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 CYB561D2O14569 222 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 EXTL3O43909 919 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 PAX3P23760 479 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 TAF6P49848 677 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 SNW1Q13573 536 aaKnown RBP15.24■□□□□ 0.03
UPF3A-204ENST00000475218 PDZD4Q76G19 769 aaPredicted RBP15.24■□□□□ 0.03
UPF3A-204ENST00000475218 DTWD2Q8NBA8 298 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 ASB16Q96NS5 453 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 C7orf25Q9BPX7 421 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 PYM1Q9BRP8 204 aaKnown RBP15.24■□□□□ 0.03
UPF3A-204ENST00000475218 PDE11AQ9HCR9 933 aa15.24■□□□□ 0.03
UPF3A-204ENST00000475218 ZNF334Q9HCZ1 680 aaPredicted RBP15.24■□□□□ 0.03
UPF3A-204ENST00000475218 POLR2DO15514 142 aaKnown RBP15.23■□□□□ 0.03
UPF3A-204ENST00000475218 TGFB1I1O43294 461 aa15.23■□□□□ 0.03
UPF3A-204ENST00000475218 DCNP07585 359 aaKnown RBP15.23■□□□□ 0.03
UPF3A-204ENST00000475218 MYL4P12829 197 aa15.23■□□□□ 0.03
UPF3A-204ENST00000475218 RESP18Q5W5W9 173 aa15.23■□□□□ 0.03
UPF3A-204ENST00000475218 NT5DC4Q86YG4 428 aa15.23■□□□□ 0.03
UPF3A-204ENST00000475218 SYCP3Q8IZU3 236 aa15.23■□□□□ 0.03
UPF3A-204ENST00000475218 IQUBQ8NA54 791 aa15.23■□□□□ 0.03
UPF3A-204ENST00000475218 ATOH1Q92858 354 aaPredicted RBP15.23■□□□□ 0.03
UPF3A-204ENST00000475218 ELSPBP1Q96BH3 223 aa15.23■□□□□ 0.03
UPF3A-204ENST00000475218 RSPRY1Q96DX4 576 aa15.23■□□□□ 0.03
UPF3A-204ENST00000475218 ZNF512Q96ME7 567 aaPredicted RBP15.23■□□□□ 0.03
UPF3A-204ENST00000475218 MKNK1Q9BUB5 465 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms