RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 GOLGA2P5Q9HBQ8 144 aa11.06□□□□□ -0.64
COL12A1-206ENST00000474564 CISHQ9NSE2 258 aa11.06□□□□□ -0.64
COL12A1-206ENST00000474564 RNF19AQ9NV58 838 aa11.06□□□□□ -0.64
COL12A1-206ENST00000474564 PUF60Q9UHX1 559 aaKnown RBP11.06□□□□□ -0.64
COL12A1-206ENST00000474564 BARX2Q9UMQ3 279 aaPredicted RBP11.06□□□□□ -0.64
COL12A1-206ENST00000474564 SSX2IPQ9Y2D8 614 aa11.06□□□□□ -0.64
COL12A1-206ENST00000474564 CEP350Q5VT06 3117 aa11.06□□□□□ -0.64
COL12A1-206ENST00000474564 SF3B1O75533 1304 aaKnown RBP eCLIP11.06□□□□□ -0.64
COL12A1-206ENST00000474564 A8MXQ7 604 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 H7C4K7 107 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 FOXN3O00409 490 aaPredicted RBP11.05□□□□□ -0.64
COL12A1-206ENST00000474564 CITO14578 2027 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 NRP1O14786 923 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 AKR1B10O60218 316 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 TACC1O75410 805 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 GFPT2O94808 682 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 DDHD2O94830 711 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 PAEPP09466 180 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 WEE2P0C1S8 567 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 TNFAIP3P21580 790 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 BCAR1P56945 870 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 SNX16P57768 344 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 DEFB103AP81534 67 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 CDK17Q00537 523 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 SOX4Q06945 474 aaPredicted RBP11.05□□□□□ -0.64
COL12A1-206ENST00000474564 STILQ15468 1287 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 MAPRE1Q15691 268 aaKnown RBP11.05□□□□□ -0.64
COL12A1-206ENST00000474564 TCTN1Q2MV58 587 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 GJB7Q6PEY0 223 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 SCARA5Q6ZMJ2 495 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 C16orf59Q7L2K0 433 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 ZNF677Q86XU0 584 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 ZNF280BQ86YH2 543 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 FAM71AQ8IYT1 594 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 CCDC170Q8IYT3 715 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 ADGRF2Q8IZF7 708 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 CRIPAKQ8N1N5 446 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 HEXIM2Q96MH2 286 aaKnown RBP11.05□□□□□ -0.64
COL12A1-206ENST00000474564 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.05□□□□□ -0.64
COL12A1-206ENST00000474564 BCO2Q9BYV7 579 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 TTYH3Q9C0H2 523 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 SEPT11Q9NVA2 429 aaKnown RBP11.05□□□□□ -0.64
COL12A1-206ENST00000474564 SPG21Q9NZD8 308 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 ADAM28Q9UKQ2 775 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 PCDHB8Q9UN66 801 aa11.05□□□□□ -0.64
COL12A1-206ENST00000474564 PRG3Q9Y2Y8 225 aaPredicted RBP11.05□□□□□ -0.64
COL12A1-206ENST00000474564 SSU72P8A0A1W2PR75 194 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 SYN3O14994 580 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 EPHB6O15197 1021 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 ARHGAP6O43182 974 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 LPXNO60711 386 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 GALTP07902 379 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 CD19P15391 556 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 TYMPP19971 482 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 HNRNPH3P31942 346 aaKnown RBP11.04□□□□□ -0.64
COL12A1-206ENST00000474564 MAGEA10P43363 369 aaPredicted RBP11.04□□□□□ -0.64
COL12A1-206ENST00000474564 ASPAP45381 313 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 AFF1P51825 1210 aaKnown RBP11.04□□□□□ -0.64
COL12A1-206ENST00000474564 JAM2P57087 298 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 KRT83P78385 493 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 TSPY1Q01534 308 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 YWHAHQ04917 246 aaPredicted RBP11.04□□□□□ -0.64
COL12A1-206ENST00000474564 NAB2Q15742 525 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 KCNT2Q6UVM3 1135 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 TC2NQ8N9U0 490 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 RBBP8NLQ8NC74 664 aaPredicted RBP11.04□□□□□ -0.64
COL12A1-206ENST00000474564 MSANTD4Q8NCY6 345 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 BAP1Q92560 729 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 ZNF689Q96CS4 500 aaPredicted RBP11.04□□□□□ -0.64
COL12A1-206ENST00000474564 TMEM176AQ96HP8 235 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 FAM84AQ96KN4 292 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 SUSD3Q96L08 255 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 KREMEN1Q96MU8 473 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 SAMD11Q96NU1 681 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 CXCL16Q9H2A7 254 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 APOBEC3GQ9HC16 384 aaKnown RBP11.04□□□□□ -0.64
COL12A1-206ENST00000474564 MSRAQ9UJ68 235 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 POLIQ9UNA4 740 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 ATP8B3O60423 1300 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 RALGAPA2Q2PPJ7 1873 aa11.04□□□□□ -0.64
COL12A1-206ENST00000474564 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.03□□□□□ -0.64
COL12A1-206ENST00000474564 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.03□□□□□ -0.64
COL12A1-206ENST00000474564 CYP26A1O43174 497 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 THAP12O43422 761 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 VDRP11473 427 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 WARSP23381 471 aaKnown RBP11.03□□□□□ -0.64
COL12A1-206ENST00000474564 GNA15P30679 374 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 PRKCIP41743 596 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 SLC11A1P49279 550 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 GATMP50440 423 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 NDST1P52848 882 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 CDH8P55286 799 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 HTRA4P83105 476 aaPredicted RBP11.03□□□□□ -0.64
COL12A1-206ENST00000474564 APBA1Q02410 837 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 CREMQ03060 361 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 GOLGA8FQ08AF8 430 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 GOLGA8DPQ0D2H9 430 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 ARID5BQ14865 1188 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 USP41Q3LFD5 358 aa11.03□□□□□ -0.64
COL12A1-206ENST00000474564 TIGD5Q53EQ6 642 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms