RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PHLDB3Q6NSJ2 640 aa20.1■□□□□ 0.81
COL7A1-209ENST00000474432 TTC9BQ8N6N2 239 aa20.1■□□□□ 0.81
COL7A1-209ENST00000474432 CXorf38Q8TB03 319 aa20.1■□□□□ 0.81
COL7A1-209ENST00000474432 ATOH1Q92858 354 aaPredicted RBP20.1■□□□□ 0.81
COL7A1-209ENST00000474432 HPS3Q969F9 1004 aa20.1■□□□□ 0.81
COL7A1-209ENST00000474432 SAAL1Q96ER3 474 aa20.1■□□□□ 0.81
COL7A1-209ENST00000474432 FAM84AQ96KN4 292 aa20.1■□□□□ 0.81
COL7A1-209ENST00000474432 ZNF396Q96N95 335 aaPredicted RBP20.1■□□□□ 0.81
COL7A1-209ENST00000474432 CBWD1Q9BRT8 395 aa20.1■□□□□ 0.81
COL7A1-209ENST00000474432 FAM213AQ9BRX8 229 aa20.1■□□□□ 0.81
COL7A1-209ENST00000474432 PCDHB13Q9Y5F0 798 aa20.1■□□□□ 0.81
COL7A1-209ENST00000474432 MYO15AQ9UKN7 3530 aa20.1■□□□□ 0.81
COL7A1-209ENST00000474432 MTMR11A4FU01 709 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 ECI2O75521 394 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 PRPF6O94906 941 aaKnown RBP20.09■□□□□ 0.81
COL7A1-209ENST00000474432 ZSCAN22P10073 491 aaPredicted RBP20.09■□□□□ 0.81
COL7A1-209ENST00000474432 GARTP22102 1010 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 PAX3P23760 479 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 STARD6P59095 220 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 USP37Q86T82 979 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 BRSK2Q8IWQ3 736 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 DTWD2Q8NBA8 298 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 ATAD1Q8NBU5 361 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 ZSWIM3Q96MP5 696 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 DDX23Q9BUQ8 820 aaKnown RBP20.09■□□□□ 0.81
COL7A1-209ENST00000474432 TRIM9Q9C026 710 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 IRF2BPLQ9H1B7 796 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 TNMDQ9H2S6 317 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 EXOC7Q9UPT5 735 aa20.09■□□□□ 0.81
COL7A1-209ENST00000474432 COL4A2P08572 1712 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 SHISA7A6NL88 538 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 PROB1E7EW31 1015 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 CUTAO60888 179 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 IL18RAPO95256 599 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 F13A1P00488 732 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 ODC1P11926 461 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 GLULP15104 373 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 GJA1P17302 382 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 ALCAMQ13740 583 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 FAM78AQ5JUQ0 283 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 CNNM4Q6P4Q7 775 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 TMC8Q8IU68 726 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 ZNF512Q96ME7 567 aaPredicted RBP20.08■□□□□ 0.81
COL7A1-209ENST00000474432 SLC27A5Q9Y2P5 690 aa20.08■□□□□ 0.81
COL7A1-209ENST00000474432 NCANO14594 1321 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 GOLGA8IPA6NC78 632 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 GOLGA8JA6NMD2 632 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 ZNF197O14709 1029 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 TAF6P49848 677 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 SNW1Q13573 536 aaKnown RBP20.07■□□□□ 0.8
COL7A1-209ENST00000474432 FOXD4L6Q3SYB3 417 aaPredicted RBP20.07■□□□□ 0.8
COL7A1-209ENST00000474432 FOXD4L3Q6VB84 417 aaPredicted RBP20.07■□□□□ 0.8
COL7A1-209ENST00000474432 PDZD4Q76G19 769 aaPredicted RBP20.07■□□□□ 0.8
COL7A1-209ENST00000474432 LRRTM3Q86VH5 581 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 NT5DC4Q86YG4 428 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 HSCBQ8IWL3 235 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 CCDC65Q8IXS2 484 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 C1orf127Q8N9H9 656 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 SHKBP1Q8TBC3 707 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 ELSPBP1Q96BH3 223 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 DHX58Q96C10 678 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 ASB16Q96NS5 453 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 FOXQ1Q9C009 403 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 ZCWPW1Q9H0M4 648 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 DMDP11532 3685 aa20.07■□□□□ 0.8
COL7A1-209ENST00000474432 MIA3Q5JRA6 1907 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 CACNA1IQ9P0X4 2223 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 CYB561D2O14569 222 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 LRRN2O75325 713 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 SOAT2O75908 522 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 NBL1P41271 181 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 EHHADHQ08426 723 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 SLC44A4Q53GD3 710 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 CYP4A22Q5TCH4 519 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 WSCD1Q658N2 575 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 EPM2AIP1Q7L775 607 aaPredicted RBP20.06■□□□□ 0.8
COL7A1-209ENST00000474432 PYM1Q9BRP8 204 aaKnown RBP20.06■□□□□ 0.8
COL7A1-209ENST00000474432 CUEDC2Q9H467 287 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 PCIF1Q9H4Z3 704 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 PCDHA7Q9UN72 937 aa20.06■□□□□ 0.8
COL7A1-209ENST00000474432 KPNA7A9QM74 516 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 STK25O00506 426 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 EXTL3O43909 919 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 DCNP07585 359 aaKnown RBP20.05■□□□□ 0.8
COL7A1-209ENST00000474432 MYL4P12829 197 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 CDR1P51861 262 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 ANGPT1Q15389 498 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 IQCEQ6IPM2 695 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 SYCP3Q8IZU3 236 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 ELMOD1Q8N336 334 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 LEMD2Q8NC56 503 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 PJA1Q8NG27 643 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 C7orf25Q9BPX7 421 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 TMEM206Q9H813 350 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 PDE11AQ9HCR9 933 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 ZNF334Q9HCZ1 680 aaPredicted RBP20.05■□□□□ 0.8
COL7A1-209ENST00000474432 ASAH2Q9NR71 780 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 RBAKQ9NYW8 714 aaPredicted RBP20.05■□□□□ 0.8
COL7A1-209ENST00000474432 HSFX1Q9UBD0 423 aa20.05■□□□□ 0.8
COL7A1-209ENST00000474432 SIT1Q9Y3P8 196 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms