RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SPTLC1O15269 473 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 CUTAO60888 179 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 OAZ2O95190 189 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 F13A1P00488 732 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 SP9P0CG40 484 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 ZSCAN22P10073 491 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 STARD6P59095 220 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 ALCAMQ13740 583 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 PDZD4Q76G19 769 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 EFCAB13Q8IY85 973 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 ZSWIM2Q8NEG5 633 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 TCEAL4Q96EI5 215 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 FAM213AQ9BRX8 229 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 TNMDQ9H2S6 317 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 DPP3Q9NY33 737 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 C2CD2Q9Y426 696 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 GTF3C3Q9Y5Q9 886 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 GVINP1Q7Z2Y8 2422 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 COL4A3Q01955 1670 aa17.01■□□□□ 0.31
CCDC88B-205ENST00000472524 ZNF638Q14966 1978 aaKnown RBP17■□□□□ 0.31
CCDC88B-205ENST00000472524 ANO9A1A5B4 782 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 OR6C75A6NL08 312 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 PIRO00625 290 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 PRPF6O94906 941 aaKnown RBP17■□□□□ 0.31
CCDC88B-205ENST00000472524 LMNAP02545 664 aaKnown RBP17■□□□□ 0.31
CCDC88B-205ENST00000472524 TYMPP19971 482 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 E2F4Q16254 413 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 IQCEQ6IPM2 695 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 SHC4Q6S5L8 630 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 C1orf210Q8IVY1 113 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 HS6ST3Q8IZP7 471 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 HPS3Q969F9 1004 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 ZNF512Q96ME7 567 aaPredicted RBP17■□□□□ 0.31
CCDC88B-205ENST00000472524 TMEM209Q96SK2 561 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 OXCT2Q9BYC2 517 aaPredicted RBP17■□□□□ 0.31
CCDC88B-205ENST00000472524 AVENQ9NQS1 362 aaPredicted RBP17■□□□□ 0.31
CCDC88B-205ENST00000472524 MTF2Q9Y483 593 aaPredicted RBP17■□□□□ 0.31
CCDC88B-205ENST00000472524 YIPF1Q9Y548 306 aa17■□□□□ 0.31
CCDC88B-205ENST00000472524 SPTBN4Q9H254 2564 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 FAM186AA6NE01 2351 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 GOLGA8IPA6NC78 632 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 GOLGA8JA6NMD2 632 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 IL18RAPO95256 599 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 VNN2O95498 520 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 MYL4P12829 197 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 CCR2P41597 374 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 ID4P47928 161 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 TAF6P49848 677 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 WNT7BP56706 349 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 FOXK2Q01167 660 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 DUSP4Q13115 394 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 PKP1Q13835 747 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 PRSS36Q5K4E3 855 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 CYP4A22Q5TCH4 519 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 POTEHQ6S545 545 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 BRSK2Q8IWQ3 736 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 MAML2Q8IZL2 1156 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 GLIS3Q8NEA6 775 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 SHDQ96IW2 340 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 PYM1Q9BRP8 204 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 CBWD1Q9BRT8 395 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 CRISPLD1Q9H336 500 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 SEMA4AQ9H3S1 761 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 PCIF1Q9H4Z3 704 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 GDE1Q9NZC3 331 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 CEP72Q9P209 647 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 MAFFQ9ULX9 164 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 DENND4CQ5VZ89 1909 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 TICRRQ7Z2Z1 1910 aa16.99■□□□□ 0.31
CCDC88B-205ENST00000472524 MTMR11A4FU01 709 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 NRG2O14511 850 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 CYB561D2O14569 222 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 ZNF197O14709 1029 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 LDHAP00338 332 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 GARTP22102 1010 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 PAX3P23760 479 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 CDR1P51861 262 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 ASIC1P78348 528 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 TFAMQ00059 246 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 POU5F1Q01860 360 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 GPR17Q13304 367 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 MYBPC2Q14324 1141 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 MLF2Q15773 248 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 SLC44A4Q53GD3 710 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 ARMCX5Q6P1M9 558 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 DDX23Q9BUQ8 820 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 TRIM9Q9C026 710 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 LRRC27Q9C0I9 530 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 CUEDC2Q9H467 287 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 TMEM206Q9H813 350 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 ASAH2Q9NR71 780 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 KBTBD4Q9NVX7 518 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 RBAKQ9NYW8 714 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 NUP210Q8TEM1 1887 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 CACNA1IQ9P0X4 2223 aa16.98■□□□□ 0.31
CCDC88B-205ENST00000472524 FRYLO94915 3013 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 KANSL1LA0AUZ9 987 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 POLR2DO15514 142 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 CYP11A1P05108 521 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 PDIA4P13667 645 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms