RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	COLEC11	Q9BWP8	271 aa		4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	C1QTNF3	Q9BXJ4	246 aa		4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	ZNF518B	Q9C0D4	1074 aa		4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	TINAGL1	Q9GZM7	467 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	ZNF703	Q9H7S9	590 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	NLRC4	Q9NPP4	1024 aa		4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	COL20A1	Q9P218	1284 aa		4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	AFF4	Q9UHB7	1163 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	PADI4	Q9UM07	663 aa		4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	AGAP1	Q9UPQ3	857 aa		4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	ATP11B	Q9Y2G3	1177 aa		4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044	ARID1B	Q8NFD5	2236 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-209	ENST00000472044		A0A087WWL8	130 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	RASA4B	C9J798	803 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	RASA4	O43374	803 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	RECQL4	O94761	1208 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	IL18RAP	O95256	599 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	MYL3	P08590	195 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	PIM1	P11309	404 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	FCER1A	P12319	257 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	ZKSCAN1	P17029	563 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	SLC11A2	P49281	568 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	PTTG1IP	P53801	180 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	CTSW	P56202	376 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	PIGF	Q07326	219 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	ZNF543	Q08ER8	600 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	SLC13A2	Q13183	592 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	CTBP1	Q13363	440 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	OS9	Q13438	667 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	DAG1	Q14118	895 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	LONRF1	Q17RB8	773 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	AMOT	Q4VCS5	1084 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	SLC44A4	Q53GD3	710 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	FAM160B1	Q5W0V3	765 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	TSHZ3	Q63HK5	1081 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	LMBRD2	Q68DH5	695 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	GDF7	Q7Z4P5	450 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	MORC1	Q86VD1	984 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	MICU3	Q86XE3	530 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	FAM186B	Q8IYM0	893 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	CFAP52	Q8N1V2	620 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	CHST13	Q8NET6	341 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	OR56A1	Q8NGH5	318 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	PARD3B	Q8TEW8	1205 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	MARS2	Q96GW9	593 aa	Known RBP	4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	PHACTR3	Q96KR7	559 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	CNPPD1	Q9BV87	410 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	SPATA5L1	Q9BVQ7	753 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	TLR10	Q9BXR5	811 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	IMPG2	Q9BZV3	1241 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	KLC2	Q9H0B6	622 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	RNPEP	Q9H4A4	650 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	STARD7	Q9NQZ5	370 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	SMPD4	Q9NXE4	827 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	ETAA1	Q9NY74	926 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	SRRD	Q9UH36	339 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	ST6GALNAC2	Q9UJ37	374 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	SNX13	Q9Y5W8	968 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044	COMMD10	Q9Y6G5	202 aa		4.72	□□□□□ -1.65
PTCD3-209	ENST00000472044		A0A1B0GTW7	788 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	GAGE12B	A1L429	117 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	GAGE12H	A6NDE8	117 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	MBD3L4	A6NDZ8	208 aa	Predicted RBP	4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	MBD3L3	A6NE82	208 aa	Predicted RBP	4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	AHRR	A9YTQ3	701 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044		E7ENX8	843 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	ZNF185	O15231	689 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	FOXD2	O60548	495 aa	Predicted RBP	4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	UNC5C	O95185	931 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	GRP	P07492	148 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	SPATA31D3	P0C874	917 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	WNT3	P56703	355 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	RNASE9	P60153	205 aa	Known RBP	4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	TAP2	Q03519	686 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	ZNF844	Q08AG5	666 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	CRHR2	Q13324	411 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	RAB32	Q13637	225 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	TOB2	Q14106	344 aa	Predicted RBP	4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	RABL3	Q5HYI8	236 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	ZNF585A	Q6P3V2	769 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	LRRC55	Q6ZSA7	311 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	SPATA31D4	Q6ZUB0	917 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	TMPRSS9	Q7Z410	1059 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	SRL	Q86TD4	932 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	OR2C3	Q8N628	320 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	RNF152	Q8N8N0	203 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044		Q8NA96	180 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	POC1B	Q8TC44	478 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	BRI3BP	Q8WY22	251 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	SGCZ	Q96LD1	299 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	CCDC138	Q96M89	665 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	CDK5RAP1	Q96SZ6	601 aa	Known RBP	4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	BRIP1	Q9BX63	1249 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	KRTAP3-1	Q9BYR8	98 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	PNPLA8	Q9NP80	782 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	SACM1L	Q9NTJ5	587 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	CTTNBP2NL	Q9P2B4	639 aa		4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	EIF2B4	Q9UI10	523 aa	Known RBP	4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044	NEU2	Q9Y3R4	380 aa		4.71	□□□□□ -1.66

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