RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 SCARA5Q6ZMJ2 495 aa15.88■□□□□ 0.13
COL9A3-209ENST00000469852 LIMS2Q7Z4I7 341 aa15.88■□□□□ 0.13
COL9A3-209ENST00000469852 CEP57Q86XR8 500 aa15.88■□□□□ 0.13
COL9A3-209ENST00000469852 MAFAQ8NHW3 353 aaPredicted RBP15.88■□□□□ 0.13
COL9A3-209ENST00000469852 NAP1L5Q96NT1 182 aaPredicted RBP15.88■□□□□ 0.13
COL9A3-209ENST00000469852 INTS2Q9H0H0 1204 aaKnown RBP15.88■□□□□ 0.13
COL9A3-209ENST00000469852 SMYD3Q9H7B4 428 aa15.88■□□□□ 0.13
COL9A3-209ENST00000469852 VRTNQ9H8Y1 702 aa15.88■□□□□ 0.13
COL9A3-209ENST00000469852 TLR9Q9NR96 1032 aa15.88■□□□□ 0.13
COL9A3-209ENST00000469852 GDAP2Q9NXN4 497 aa15.88■□□□□ 0.13
COL9A3-209ENST00000469852 NXF1Q9UBU9 619 aaKnown RBP15.88■□□□□ 0.13
COL9A3-209ENST00000469852 PCDHB8Q9UN66 801 aa15.88■□□□□ 0.13
COL9A3-209ENST00000469852 R3HCC1Q9Y3T6 440 aaKnown RBP15.88■□□□□ 0.13
COL9A3-209ENST00000469852 SPTBN5Q9NRC6 3674 aaKnown RBP15.88■□□□□ 0.13
COL9A3-209ENST00000469852 REV3LO60673 3130 aa15.88■□□□□ 0.13
COL9A3-209ENST00000469852 HIDE1A8MVS5 230 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 P4HA2O15460 535 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 TEX33O43247 280 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 HCRTO43612 131 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 TRAPPC3O43617 180 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 SLC9A1P19634 815 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 ASPAP45381 313 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 RAP1GAPP47736 663 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 GLUD2P49448 558 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 KLK7P49862 253 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 DSG1Q02413 1049 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 UBE3AQ05086 875 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 KCNMA1Q12791 1236 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 PTPN14Q15678 1187 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 USP41Q3LFD5 358 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 ZNF667Q5HYK9 610 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 KIAA0319Q5VV43 1072 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 PLPP4Q5VZY2 271 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 WSCD1Q658N2 575 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 DPY19L2P1Q6NXN4 242 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 RSPO2Q6UXX9 243 aaPredicted RBP15.87■□□□□ 0.13
COL9A3-209ENST00000469852 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.87■□□□□ 0.13
COL9A3-209ENST00000469852 OSTM1Q86WC4 334 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 ARHGEF19Q8IW93 802 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 PDCL2Q8N4E4 241 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 EHBP1Q8NDI1 1231 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 KBTBD7Q8WVZ9 684 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 ARID3AQ99856 593 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 TCF25Q9BQ70 676 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 TTPALQ9BTX7 342 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 GCNT4Q9P109 453 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 NME7Q9Y5B8 376 aa15.87■□□□□ 0.13
COL9A3-209ENST00000469852 PRUNE2Q8WUY3 3088 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 LGALS16A8MUM7 142 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 AP5Z1O43299 807 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 LILRB3O75022 631 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 CLSTN1O94985 981 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 CYP11A1P05108 521 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 CTSAP10619 480 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 ODC1P11926 461 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 RPL17P18621 184 aaKnown RBP15.86■□□□□ 0.13
COL9A3-209ENST00000469852 CDH8P55286 799 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 FANCCQ00597 558 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 ELAVL2Q12926 359 aaKnown RBP15.86■□□□□ 0.13
COL9A3-209ENST00000469852 MRPL58Q14197 206 aaKnown RBP15.86■□□□□ 0.13
COL9A3-209ENST00000469852 VARS2Q5ST30 1063 aaKnown RBP15.86■□□□□ 0.13
COL9A3-209ENST00000469852 GJB7Q6PEY0 223 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 TMC7Q7Z402 723 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 ADGRD2Q7Z7M1 963 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 LNX1Q8TBB1 728 aaPredicted RBP15.86■□□□□ 0.13
COL9A3-209ENST00000469852 RIN2Q8WYP3 895 aaPredicted RBP15.86■□□□□ 0.13
COL9A3-209ENST00000469852 TAF4BQ92750 862 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 KAT5Q92993 513 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 MMS19Q96T76 1030 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 RTP3Q9BQQ7 232 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 MRPL45Q9BRJ2 306 aaKnown RBP15.86■□□□□ 0.13
COL9A3-209ENST00000469852 SIX2Q9NPC8 291 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 RTN4Q9NQC3 1192 aaKnown RBP15.86■□□□□ 0.13
COL9A3-209ENST00000469852 ENTPD7Q9NQZ7 604 aa15.86■□□□□ 0.13
COL9A3-209ENST00000469852 PUF60Q9UHX1 559 aaKnown RBP15.86■□□□□ 0.13
COL9A3-209ENST00000469852 AJAP1Q9UKB5 411 aaPredicted RBP15.86■□□□□ 0.13
COL9A3-209ENST00000469852 A0A1B0GTH6 734 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 GTPBP10A4D1E9 387 aaKnown RBP15.85■□□□□ 0.13
COL9A3-209ENST00000469852 SYN3O14994 580 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 ADAM12O43184 909 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 HUS1O60921 280 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 CXCL14O95715 111 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 URODP06132 367 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 WEE2P0C1S8 567 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 TYMPP19971 482 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 PAX3P23760 479 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 PON1P27169 355 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 TNNC1P63316 161 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 TPM4P67936 248 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 EXOC3L4Q17RC7 722 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 PHLDB3Q6NSJ2 640 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 TRIM65Q6PJ69 517 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 GBP6Q6ZN66 633 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 TOP6BLQ8N6T0 577 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 ANKRD20A12PQ8NF67 263 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 PIK3R5Q8WYR1 880 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 TMEM209Q96SK2 561 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 BCO2Q9BYV7 579 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 IMPG2Q9BZV3 1241 aa15.85■□□□□ 0.13
COL9A3-209ENST00000469852 NIF3L1Q9GZT8 377 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms