RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CENPTQ96BT3 561 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 SEC16BQ96JE7 1060 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 SCLT1Q96NL6 688 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 FAM129AQ9BZQ8 928 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 ANAPC5Q9UJX4 755 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 C5orf60A6NFR6 353 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 FOXO6A8MYZ6 492 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 ADM5C9JUS6 153 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 ABLIM1O14639 778 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 PRKCBP05771 671 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 TGFB3P10600 412 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 DRD4P21917 467 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 EFNA5P52803 228 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 TFAMQ00059 246 aaKnown RBP9.49□□□□□ -0.89
SYNE1-217ENST00000466159 R3HDM1Q15032 1099 aaKnown RBP9.49□□□□□ -0.89
SYNE1-217ENST00000466159 TMEM63BQ5T3F8 832 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 ZFYVE27Q5T4F4 411 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 IER5Q5VY09 327 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 KAZNQ674X7 775 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 SCARA5Q6ZMJ2 495 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 SYDE1Q6ZW31 735 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-217ENST00000466159 YTHDF3Q7Z739 585 aaKnown RBP9.49□□□□□ -0.89
SYNE1-217ENST00000466159 CCDC125Q86Z20 511 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 RHPN2Q8IUC4 686 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 THNSL1Q8IYQ7 743 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 C3orf20Q8ND61 904 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 EXD1Q8NHP7 514 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 CHMP6Q96FZ7 201 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 OTUD5Q96G74 571 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 GPR20Q99678 358 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 SGIP1Q9BQI5 828 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 CISHQ9NSE2 258 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 CSADQ9Y600 493 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 MGAMO43451 1857 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 MCM3APO60318 1980 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 TMEM191CA6NGB0 347 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 F8VP50 259 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 OGTO15294 1046 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 CNMDO75829 334 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 TMEM191BP0C7N4 346 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 IRX3P78415 501 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 OGDHQ02218 1023 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 SF3A3Q12874 501 aaKnown RBP eCLIP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 NFX1Q12986 1120 aaKnown RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 MAPK6Q16659 721 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 DUOXA2Q1HG44 320 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 CDCA2Q69YH5 1023 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 TXNRD3NBQ6F5E7 133 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 CROCCP2Q86T23 111 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 EXOC3L1Q86VI1 746 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 TMEM130Q8N3G9 435 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 WDTC1Q8N5D0 677 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 CEP120Q8N960 986 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 TFAP2BQ92481 460 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 ACSF2Q96CM8 615 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 CABS1Q96KC9 395 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 MCEEQ96PE7 176 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 ZNF317Q96PQ6 595 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 PRMT1Q99873 361 aaKnown RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 TRAIPQ9BWF2 469 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 ELP3Q9H9T3 547 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 TXNRD2Q9NNW7 524 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 INTS9Q9NV88 658 aaKnown RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 CTNNAL1Q9UBT7 734 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 IP6K2Q9UHH9 426 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 GGA2Q9UJY4 613 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 CPSF3Q9UKF6 684 aaKnown RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 CAPN7Q9Y6W3 813 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 IVNS1ABPQ9Y6Y0 642 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 A0A0G2JMZ2 1700 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 TCRBV5S1A1TA0A578 114 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 NOP56O00567 594 aaKnown RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 B4GALT5O43286 388 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 DDNO94850 711 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 TTC4O95801 387 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 CREB1P16220 341 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 AP3M2P53677 418 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 MCL1Q07820 350 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 TRPC3Q13507 836 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 SGSM1Q2NKQ1 1148 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 Q3C1V9 767 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 CYP4A22Q5TCH4 519 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 FBXW10Q5XX13 1052 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 MFSD5Q6N075 450 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 GPAT2Q6NUI2 795 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 MFSD7Q6UXD7 560 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 ZNF365Q70YC5 407 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 GLIS1Q8NBF1 620 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 COPS5Q92905 334 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 CLMNQ96JQ2 1002 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 FAM167AQ96KS9 214 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 FGD4Q96M96 766 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 JPH2Q9BR39 696 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 ROPN1BQ9BZX4 212 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 NIF3L1Q9GZT8 377 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 ASCC2Q9H1I8 757 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 ROPN1Q9HAT0 212 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-217ENST00000466159 HOMER3Q9NSC5 361 aa9.48□□□□□ -0.89
SYNE1-217ENST00000466159 EVPLQ92817 2033 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 PAPPA2Q9BXP8 1791 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms