RNA–Protein interactions for RNA: ENST00000458610.6

CD28-203, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 705 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-203ENST00000458610 TRAPPC11Q7Z392 1133 aa17.4■□□□□ 0.38
CD28-203ENST00000458610 SPATA18Q8TC71 538 aa17.4■□□□□ 0.38
CD28-203ENST00000458610 TMC2Q8TDI7 906 aa17.4■□□□□ 0.38
CD28-203ENST00000458610 SMG7Q92540 1137 aaKnown RBP17.4■□□□□ 0.38
CD28-203ENST00000458610 NECAB3Q96P71 396 aaPredicted RBP17.4■□□□□ 0.38
CD28-203ENST00000458610 TIMM13Q9Y5L4 95 aaPredicted RBP17.4■□□□□ 0.38
CD28-203ENST00000458610 PRRG1O14668 218 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 PHACTR2O75167 634 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 C8AP07357 584 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 KRT13P13646 458 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 NR2F2P24468 414 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 PSMC2P35998 433 aaKnown RBP17.39■□□□□ 0.37
CD28-203ENST00000458610 SMARCB1Q12824 385 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 BFSP1Q12934 665 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 DPH6Q7L8W6 267 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 TMEM86AQ8N2M4 240 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 PLCD3Q8N3E9 789 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 OR5B17Q8NGF7 314 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 BORCS6Q96GS4 357 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 HPDLQ96IR7 371 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 RPGRIP1Q96KN7 1286 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 GDAP2Q9NXN4 497 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 AFF4Q9UHB7 1163 aaKnown RBP17.39■□□□□ 0.37
CD28-203ENST00000458610 USTQ9Y2C2 406 aa17.39■□□□□ 0.37
CD28-203ENST00000458610 PDCD11Q14690 1871 aaKnown RBP17.39■□□□□ 0.37
CD28-203ENST00000458610 GOLGA6L22H0YM25 854 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 PSMA7O14818 248 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 IKBKBO14920 756 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 CETN3O15182 167 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 RFPL2O75678 378 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 POU2F2P09086 479 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 FAM163BP0C2L3 166 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 PRCPP42785 496 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 ENPEPQ07075 957 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 GPR17Q13304 367 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 LMBRD2Q68DH5 695 aaPredicted RBP17.38■□□□□ 0.37
CD28-203ENST00000458610 INTS8Q75QN2 995 aaKnown RBP17.38■□□□□ 0.37
CD28-203ENST00000458610 OTOP3Q7RTS5 596 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 TCEAL8Q8IYN2 117 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 TMEM130Q8N3G9 435 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 SLC7A14Q8TBB6 771 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 PARD3BQ8TEW8 1205 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 ACSF2Q96CM8 615 aaPredicted RBP17.38■□□□□ 0.37
CD28-203ENST00000458610 DHTKD1Q96HY7 919 aaPredicted RBP17.38■□□□□ 0.37
CD28-203ENST00000458610 POMKQ9H5K3 350 aa17.38■□□□□ 0.37
CD28-203ENST00000458610 WDR27A2RRH5 827 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 LOC730098B7Z3J9 87 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 LRG1P02750 347 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 WEE2P0C1S8 567 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 ATICP31939 592 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 LHX1P48742 406 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 CLDN10P78369 228 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 BIRC3Q13489 604 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 WSCD1Q658N2 575 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 CENPPQ6IPU0 288 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 DCP1BQ8IZD4 617 aaKnown RBP17.37■□□□□ 0.37
CD28-203ENST00000458610 ELMOD1Q8N336 334 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 TOP6BLQ8N6T0 577 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 CXorf38Q8TB03 319 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 MKNK1Q9BUB5 465 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 CYP4F11Q9HBI6 524 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 WDR6Q9NNW5 1121 aaKnown RBP17.37■□□□□ 0.37
CD28-203ENST00000458610 SIX4Q9UIU6 781 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 SNX9Q9Y5X1 595 aa17.37■□□□□ 0.37
CD28-203ENST00000458610 TCF20Q9UGU0 1960 aaKnown RBP17.37■□□□□ 0.37
CD28-203ENST00000458610 ALADP13716 330 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 VAMP7P51809 220 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 FKBP3Q00688 224 aaKnown RBP17.36■□□□□ 0.37
CD28-203ENST00000458610 MYL7Q01449 175 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 TSPY1Q01534 308 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 LRRC63Q05C16 580 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 ADCY1Q08828 1119 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 PLD1Q13393 1074 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 FAM186BQ8IYM0 893 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 SMYD4Q8IYR2 804 aaPredicted RBP17.36■□□□□ 0.37
CD28-203ENST00000458610 ADSSL1Q8N142 457 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 TRIML1Q8N9V2 468 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 TDRD5Q8NAT2 981 aaKnown RBP17.36■□□□□ 0.37
CD28-203ENST00000458610 C2orf15Q8WU43 125 aaKnown RBP17.36■□□□□ 0.37
CD28-203ENST00000458610 ERCC4Q92889 916 aaPredicted RBP17.36■□□□□ 0.37
CD28-203ENST00000458610 SYAP1Q96A49 352 aaPredicted RBP17.36■□□□□ 0.37
CD28-203ENST00000458610 ZNF707Q96C28 371 aaPredicted RBP17.36■□□□□ 0.37
CD28-203ENST00000458610 TSHZ2Q9NRE2 1034 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 HSFX1Q9UBD0 423 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 MAN1B1Q9UKM7 699 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 POLIQ9UNA4 740 aa17.36■□□□□ 0.37
CD28-203ENST00000458610 BICDL2A1A5D9 508 aa17.35■□□□□ 0.37
CD28-203ENST00000458610 STX10O60499 249 aa17.35■□□□□ 0.37
CD28-203ENST00000458610 STAU1O95793 577 aaKnown RBP17.35■□□□□ 0.37
CD28-203ENST00000458610 EPB41P11171 864 aaKnown RBP17.35■□□□□ 0.37
CD28-203ENST00000458610 CASP4P49662 377 aa17.35■□□□□ 0.37
CD28-203ENST00000458610 ZCWPW2Q504Y3 356 aa17.35■□□□□ 0.37
CD28-203ENST00000458610 ZNF516Q92618 1163 aa17.35■□□□□ 0.37
CD28-203ENST00000458610 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.35■□□□□ 0.37
CD28-203ENST00000458610 PTPRJQ12913 1337 aa17.35■□□□□ 0.37
CD28-203ENST00000458610 LRRIQ3A6PVS8 624 aaPredicted RBP17.34■□□□□ 0.37
CD28-203ENST00000458610 CCL16O15467 120 aa17.34■□□□□ 0.37
CD28-203ENST00000458610 CLUHO75153 1309 aa17.34■□□□□ 0.37
CD28-203ENST00000458610 AKAP3O75969 853 aa17.34■□□□□ 0.37
CD28-203ENST00000458610 CST3P01034 146 aaPredicted RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms