RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 DAAM2Q86T65 1068 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 USP38Q8NB14 1042 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 CPA5Q8WXQ8 436 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 TSC1Q92574 1164 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 TRAIPQ9BWF2 469 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 CTTNBP2NLQ9P2B4 639 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 FRMPD3Q5JV73 1810 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 FAM170AA1A519 330 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 BUB1BO60566 1050 aaPredicted RBP15.2■□□□□ 0.02
USP39-207ENST00000450066 LSM8O95777 96 aaKnown RBP15.2■□□□□ 0.02
USP39-207ENST00000450066 TFRCP02786 760 aaKnown RBP15.2■□□□□ 0.02
USP39-207ENST00000450066 CFHP08603 1231 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 MYBL1P10243 752 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 GHRP10912 638 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 CD52P31358 61 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 NOMO3P69849 1222 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 INCA1Q0VD86 236 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 LPIN1Q14693 890 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 NAA35Q5VZE5 725 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 C9orf57Q5W0N0 161 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 MCOLN2Q8IZK6 566 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 ZNF653Q96CK0 615 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 SEZ6LQ9BYH1 1024 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 TRPV6Q9H1D0 765 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 UVRAGQ9P2Y5 699 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 PCDHGC3Q9UN70 934 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 PTPN22Q9Y2R2 807 aa15.2■□□□□ 0.02
USP39-207ENST00000450066 PDCD11Q14690 1871 aaKnown RBP15.19■□□□□ 0.02
USP39-207ENST00000450066 PIRO00625 290 aa15.19■□□□□ 0.02
USP39-207ENST00000450066 ATF7P17544 494 aaPredicted RBP15.19■□□□□ 0.02
USP39-207ENST00000450066 RAD23BP54727 409 aa15.19■□□□□ 0.02
USP39-207ENST00000450066 TUBB4BP68371 445 aa15.19■□□□□ 0.02
USP39-207ENST00000450066 CKAP4Q07065 602 aaKnown RBP15.19■□□□□ 0.02
USP39-207ENST00000450066 NAA30Q147X3 362 aaPredicted RBP15.19■□□□□ 0.02
USP39-207ENST00000450066 ZNF618Q5T7W0 954 aa15.19■□□□□ 0.02
USP39-207ENST00000450066 PHF13Q86YI8 300 aaPredicted RBP15.19■□□□□ 0.02
USP39-207ENST00000450066 WHAMMQ8TF30 809 aa15.19■□□□□ 0.02
USP39-207ENST00000450066 VCPIP1Q96JH7 1222 aa15.19■□□□□ 0.02
USP39-207ENST00000450066 MMS19Q96T76 1030 aa15.19■□□□□ 0.02
USP39-207ENST00000450066 ZSWIM1Q9BR11 485 aa15.19■□□□□ 0.02
USP39-207ENST00000450066 OSBPL7Q9BZF2 842 aa15.19■□□□□ 0.02
USP39-207ENST00000450066 UNC93B1Q9H1C4 597 aa15.19■□□□□ 0.02
USP39-207ENST00000450066 ABCB6Q9NP58 842 aa15.19■□□□□ 0.02
USP39-207ENST00000450066 BARX2Q9UMQ3 279 aaPredicted RBP15.19■□□□□ 0.02
USP39-207ENST00000450066 CTAGE15A4D2H0 777 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 ARVCFO00192 962 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 ZNF185O15231 689 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 MED7O43513 233 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 CTAGE8P0CG41 777 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 CKBP12277 381 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 ITGA4P13612 1032 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 BRD2P25440 801 aaKnown RBP15.18■□□□□ 0.02
USP39-207ENST00000450066 PNPLA4P41247 253 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 RAB27AP51159 221 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 RPS6KA1Q15418 735 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 C11orf63Q6NUN7 778 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 MON1BQ7L1V2 547 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 RSRC2Q7L4I2 434 aaKnown RBP15.18■□□□□ 0.02
USP39-207ENST00000450066 PEX26Q7Z412 305 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 MRPL10Q7Z7H8 261 aaKnown RBP15.18■□□□□ 0.02
USP39-207ENST00000450066 CTAGE6Q86UF2 777 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 CREG2Q8IUH2 290 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 PASD1Q8IV76 773 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 CTAGE4Q8IX94 777 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 SLC4A11Q8NBS3 891 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 COG1Q8WTW3 980 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 TFAP2BQ92481 460 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 UBXN4Q92575 508 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 ZNF518BQ9C0D4 1074 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 GOLPH3Q9H4A6 298 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 AVENQ9NQS1 362 aaPredicted RBP15.18■□□□□ 0.02
USP39-207ENST00000450066 PAK6Q9NQU5 681 aaPredicted RBP15.18■□□□□ 0.02
USP39-207ENST00000450066 RNF19AQ9NV58 838 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.18■□□□□ 0.02
USP39-207ENST00000450066 V9GYY5 206 aaPredicted RBP15.18■□□□□ 0.02
USP39-207ENST00000450066 DNM1LO00429 736 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 PPEF2O14830 753 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 ATMINO43313 823 aaPredicted RBP15.18■□□□□ 0.02
USP39-207ENST00000450066 ZNF623O75123 536 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 DSC3Q14574 896 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 ERCC6LQ2NKX8 1250 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 NT5DC3Q86UY8 548 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 UBE2Q2Q8WVN8 375 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 GOLGA1Q92805 767 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 TMEM176AQ96HP8 235 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 RPGRIP1Q96KN7 1286 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 CAPZA3Q96KX2 299 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 PPP1R10Q96QC0 940 aaKnown RBP15.18■□□□□ 0.02
USP39-207ENST00000450066 NUP85Q9BW27 656 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 CNOT8Q9UFF9 292 aaKnown RBP15.18■□□□□ 0.02
USP39-207ENST00000450066 STXBP5LQ9Y2K9 1186 aa15.18■□□□□ 0.02
USP39-207ENST00000450066 CES2O00748 559 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 PTGESO14684 152 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 KIF4AO95239 1232 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 CXCR5P32302 372 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 CDH5P33151 784 aaPredicted RBP15.17■□□□□ 0.02
USP39-207ENST00000450066 C1QBPQ07021 282 aaKnown RBP15.17■□□□□ 0.02
USP39-207ENST00000450066 TMEM35BQ8NCS4 154 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 ZNF564Q8TBZ8 553 aaPredicted RBP15.17■□□□□ 0.02
USP39-207ENST00000450066 HES6Q96HZ4 224 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms