RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 LIMD1Q9UGP4 676 aa11.29□□□□□ -0.6
MCF2L-216ENST00000439475 SORCS3Q9UPU3 1222 aa11.29□□□□□ -0.6
MCF2L-216ENST00000439475 MYO10Q9HD67 2058 aa11.29□□□□□ -0.6
MCF2L-216ENST00000439475 CLUHO75153 1309 aa11.29□□□□□ -0.6
MCF2L-216ENST00000439475 NCOR1O75376 2440 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 ZNF197O14709 1029 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 PPEF2O14830 753 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 CCL16O15467 120 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 HUS1O60921 280 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 SMC2O95347 1197 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 FSHRP23945 695 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 AP3M2P53677 418 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 ADCY1Q08828 1119 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 DPYDQ12882 1025 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 GPR17Q13304 367 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 PLD1Q13393 1074 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 PSMD6Q15008 389 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 PTPN21Q16825 1174 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 DPH6Q7L8W6 267 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 SLC9A9Q8IVB4 645 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 UBALD2Q8IYN6 164 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 DCP1BQ8IZD4 617 aaKnown RBP11.28□□□□□ -0.6
MCF2L-216ENST00000439475 ZSWIM2Q8NEG5 633 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 KHSRPQ92945 711 aaKnown RBP eCLIP11.28□□□□□ -0.6
MCF2L-216ENST00000439475 TIGD1Q96MW7 591 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 CHMP5Q9NZZ3 219 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 FRMD4BQ9Y2L6 1034 aa11.28□□□□□ -0.6
MCF2L-216ENST00000439475 C2orf16Q68DN1 1984 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 SCN1AP35498 2009 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 PRR33A8MZF0 331 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 SPTLC1O15269 473 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 PHACTR2O75167 634 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 DLATP10515 647 aaKnown RBP11.27□□□□□ -0.61
MCF2L-216ENST00000439475 RPL13P26373 211 aaKnown RBP11.27□□□□□ -0.61
MCF2L-216ENST00000439475 ALDH1A3P47895 512 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 TUFMP49411 452 aaKnown RBP11.27□□□□□ -0.61
MCF2L-216ENST00000439475 ZXDAP98168 799 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 MYL7Q01449 175 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 FAM160A1Q05DH4 1040 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 CYP24A1Q07973 514 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 BFSP1Q12934 665 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 TRPC3Q13507 836 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 MTMR3Q13615 1198 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 PABPC1LQ4VXU2 614 aaKnown RBP11.27□□□□□ -0.61
MCF2L-216ENST00000439475 CYP4A22Q5TCH4 519 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 GET4Q7L5D6 327 aaPredicted RBP11.27□□□□□ -0.61
MCF2L-216ENST00000439475 FMR1NBQ8N0W7 255 aaPredicted RBP11.27□□□□□ -0.61
MCF2L-216ENST00000439475 TMEM86AQ8N2M4 240 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 GUF1Q8N442 669 aaKnown RBP11.27□□□□□ -0.61
MCF2L-216ENST00000439475 C1orf127Q8N9H9 656 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 LEMD2Q8NC56 503 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 KIAA0895Q8NCT3 520 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 SPATA18Q8TC71 538 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 C2orf15Q8WU43 125 aaKnown RBP11.27□□□□□ -0.61
MCF2L-216ENST00000439475 CCDC127Q96BQ5 260 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 BORCS6Q96GS4 357 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 LRFN3Q9BTN0 628 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 MTMR12Q9C0I1 747 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 GOLPH3LQ9H4A5 285 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 MRPS23Q9Y3D9 190 aaKnown RBP11.27□□□□□ -0.61
MCF2L-216ENST00000439475 SNX9Q9Y5X1 595 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 PRUNE2Q8WUY3 3088 aa11.27□□□□□ -0.61
MCF2L-216ENST00000439475 EYSQ5T1H1 3165 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 KINO60870 393 aaKnown RBP11.26□□□□□ -0.61
MCF2L-216ENST00000439475 PRR29P0C7W0 189 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 LHX1P48742 406 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 EPHB3P54753 998 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 TSPY1Q01534 308 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 SIGLEC14Q08ET2 396 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 TDGQ13569 410 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 WSCD1Q658N2 575 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 CEP135Q66GS9 1140 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 LMBRD2Q68DH5 695 aaPredicted RBP11.26□□□□□ -0.61
MCF2L-216ENST00000439475 RNF19BQ6ZMZ0 732 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 TRIM67Q6ZTA4 783 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 TRAPPC11Q7Z392 1133 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 ELOA2Q8IYF1 753 aaPredicted RBP11.26□□□□□ -0.61
MCF2L-216ENST00000439475 TMEM130Q8N3G9 435 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 TOP6BLQ8N6T0 577 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 SPPL2BQ8TCT7 592 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 TMEM174Q8WUU8 243 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 SMARCE1Q969G3 411 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 HPDLQ96IR7 371 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 MFSD14AQ96MC6 490 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 PGLYRP2Q96PD5 576 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 GSDMAQ96QA5 445 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 CGRRF1Q99675 332 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 KCTD10Q9H3F6 313 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 DMAC2Q9NW81 257 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 GDAP2Q9NXN4 497 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 EPS15L1Q9UBC2 864 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 DNMT3BQ9UBC3 853 aaKnown RBP11.26□□□□□ -0.61
MCF2L-216ENST00000439475 HSFX1Q9UBD0 423 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 CDH7Q9ULB5 785 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 TRAF3IP3Q9Y228 551 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 ASB3Q9Y575 518 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 INSL5Q9Y5Q6 135 aa11.26□□□□□ -0.61
MCF2L-216ENST00000439475 SEC24AO95486 1093 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 NR3C1P04150 777 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 RHOP08100 348 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms