RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PRR29P0C7W0 189 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 FSHRP23945 695 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 ZXDAP98168 799 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 DPYDQ12882 1025 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 GET4Q7L5D6 327 aaPredicted RBP16.39■□□□□ 0.21
LIMS3-201ENST00000437679 C12orf56Q8IXR9 622 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 TCEAL8Q8IYN2 117 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 RDH13Q8NBN7 331 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 MTMR12Q9C0I1 747 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 INTS13Q9NVM9 706 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.39■□□□□ 0.21
LIMS3-201ENST00000437679 CIZ1Q9ULV3 898 aaPredicted RBP16.39■□□□□ 0.21
LIMS3-201ENST00000437679 KPNA7A9QM74 516 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 EXOC3O60645 756 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 RHOBTB3O94955 611 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 RBP5P82980 135 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 ADCY1Q08828 1119 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 MYBPC2Q14324 1141 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 DUOXA2Q1HG44 320 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 LMBRD2Q68DH5 695 aaPredicted RBP16.38■□□□□ 0.21
LIMS3-201ENST00000437679 WDR49Q8IV35 697 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 THEM5Q8N1Q8 247 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 LRRC52Q8N7C0 313 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 FNBP1Q96RU3 617 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 LRFN3Q9BTN0 628 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 C11orf16Q9NQ32 467 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 SORCS3Q9UPU3 1222 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 DOCK8Q8NF50 2099 aa16.38■□□□□ 0.21
LIMS3-201ENST00000437679 PRPF40AO75400 957 aaKnown RBP16.37■□□□□ 0.21
LIMS3-201ENST00000437679 SEC24AO95486 1093 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 ASGR2P07307 311 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 OR4Q2P0C623 313 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 DLATP10515 647 aaKnown RBP16.37■□□□□ 0.21
LIMS3-201ENST00000437679 TNNI1P19237 187 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 CYP24A1Q07973 514 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 BFSP1Q12934 665 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 GPR17Q13304 367 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 MTMR3Q13615 1198 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 PSMD6Q15008 389 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 PABPC1LQ4VXU2 614 aaKnown RBP16.37■□□□□ 0.21
LIMS3-201ENST00000437679 RNF19BQ6ZMZ0 732 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 FMR1NBQ8N0W7 255 aaPredicted RBP16.37■□□□□ 0.21
LIMS3-201ENST00000437679 ELMOD1Q8N336 334 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 OR5B17Q8NGF7 314 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 CCDC127Q96BQ5 260 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 BORCS6Q96GS4 357 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 FAM84AQ96KN4 292 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 MYADMQ96S97 322 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 INSL5Q9Y5Q6 135 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 TECTAO75443 2155 aa16.37■□□□□ 0.21
LIMS3-201ENST00000437679 TSC2P49815 1807 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 PRR33A8MZF0 331 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 PDXKO00764 312 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 N4BP1O75113 896 aaKnown RBP16.36■□□□□ 0.21
LIMS3-201ENST00000437679 PTPN2P17706 415 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 ANP32AP39687 249 aaKnown RBP16.36■□□□□ 0.21
LIMS3-201ENST00000437679 NTHL1P78549 312 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 FAM160A1Q05DH4 1040 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 MYO1EQ12965 1108 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 KCNB1Q14721 858 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 WSCD1Q658N2 575 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 TRIM67Q6ZTA4 783 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 UBALD2Q8IYN6 164 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 PGLYRP2Q96PD5 576 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 CGRRF1Q99675 332 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 KCTD10Q9H3F6 313 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 HCFC1R1Q9NWW0 138 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 IGSF9Q9P2J2 1179 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 EPS15L1Q9UBC2 864 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 DNMT3BQ9UBC3 853 aaKnown RBP16.36■□□□□ 0.21
LIMS3-201ENST00000437679 SIX4Q9UIU6 781 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 ZFP37Q9Y6Q3 630 aaPredicted RBP16.36■□□□□ 0.21
LIMS3-201ENST00000437679 PTPRJQ12913 1337 aa16.36■□□□□ 0.21
LIMS3-201ENST00000437679 CALUO43852 315 aaPredicted RBP16.35■□□□□ 0.21
LIMS3-201ENST00000437679 HUS1O60921 280 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 SIGLEC14Q08ET2 396 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 TWF1Q12792 350 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 PLD1Q13393 1074 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 IQCEQ6IPM2 695 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 SLC9A9Q8IVB4 645 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 OR10T2Q8NGX3 314 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 CXorf38Q8TB03 319 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 MFSD14AQ96MC6 490 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 ZCWPW1Q9H0M4 648 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 KCNK12Q9HB15 430 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 HOOK1Q9UJC3 728 aaKnown RBP16.35■□□□□ 0.21
LIMS3-201ENST00000437679 CDH7Q9ULB5 785 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 SNX9Q9Y5X1 595 aa16.35■□□□□ 0.21
LIMS3-201ENST00000437679 TMEM221A6NGB7 291 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 M0R296 226 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 NR3C1P04150 777 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 RHOP08100 348 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 LAMP2P13473 410 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 DUSP4Q13115 394 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 PNOCQ13519 176 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 TDGQ13569 410 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 SNW1Q13573 536 aaKnown RBP16.34■□□□□ 0.21
LIMS3-201ENST00000437679 TRAPPC11Q7Z392 1133 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 TMEM86AQ8N2M4 240 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 PDCL2Q8N4E4 241 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 932.6 ms