RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 SMARCA1P28370 1054 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 SLC7A1P30825 629 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 GUCY1A2P33402 732 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 DDIT3P35638 169 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 SREBF1P36956 1147 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 ETV4P43268 484 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 GALK1P51570 392 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 ANTXR2P58335 489 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 CTXN1P60606 82 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 ZNF200P98182 395 aaPredicted RBP4.84□□□□□ -1.63
HMGB3-203ENST00000430118 FMO1Q01740 532 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 ADAM9Q13443 819 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 KHDC1Q4VXA5 237 aaKnown RBP4.84□□□□□ -1.63
HMGB3-203ENST00000430118 PTF1AQ7RTS3 328 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 OTOP2Q7RTS6 562 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 PCGF5Q86SE9 256 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 NBPF11Q86T75 865 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 ATG4DQ86TL0 474 aaPredicted RBP4.84□□□□□ -1.63
HMGB3-203ENST00000430118 FAM26EQ8N5C1 309 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 FANCBQ8NB91 859 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 OR10H5Q8NGA6 315 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 ZSCAN18Q8TBC5 510 aaPredicted RBP4.84□□□□□ -1.63
HMGB3-203ENST00000430118 KIAA1191Q96A73 305 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 GCC1Q96CN9 775 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 UIMC1Q96RL1 719 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 TTLL2Q9BWV7 592 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 BRIP1Q9BX63 1249 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 KRTAP9-2Q9BYQ4 174 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 DPH1Q9BZG8 443 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 TMEM140Q9NV12 185 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 TERF2IPQ9NYB0 399 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 RBPJLQ9UBG7 517 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 ABCF2Q9UG63 623 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 AFF4Q9UHB7 1163 aaKnown RBP4.84□□□□□ -1.63
HMGB3-203ENST00000430118 TRPS1Q9UHF7 1281 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 CCNL1Q9UK58 526 aaPredicted RBP4.84□□□□□ -1.63
HMGB3-203ENST00000430118 PNMA2Q9UL42 364 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 ZDHHC8Q9ULC8 765 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 SIK3Q9Y2K2 1263 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 PCDHA3Q9Y5H8 950 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 TUBGCP6Q96RT7 1819 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 ANKRD36BQ8N2N9 1353 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 MYBBP1AQ9BQG0 1328 aaKnown RBP4.83□□□□□ -1.64
HMGB3-203ENST00000430118 GOLGA6L3A6NEY3 463 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.83□□□□□ -1.64
HMGB3-203ENST00000430118 NT5C1B-RDH14C9J2C7 533 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 NRP1O14786 923 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 HNRNPDLO14979 420 aaKnown RBP4.83□□□□□ -1.64
HMGB3-203ENST00000430118 GPR32O75388 356 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 BRAFP15056 766 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 GYPEP15421 78 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 NPR1P16066 1061 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 SDHBP21912 280 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 GLRBP48167 497 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 ARFIP2P53365 341 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 PER3P56645 1201 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 ATP8B2P98198 1209 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 SP140Q13342 867 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 TRIM14Q14142 442 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 UBE3CQ15386 1083 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 CLEC4GQ6UXB4 293 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 ABHD15Q6UXT9 468 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 LDHAL6AQ6ZMR3 332 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 PDZD4Q76G19 769 aaPredicted RBP4.83□□□□□ -1.64
HMGB3-203ENST00000430118 FAM90A1Q86YD7 464 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 REXO1L1PQ8IX06 675 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 SYTL1Q8IYJ3 562 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 PQLC1Q8N2U9 271 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 STPG3Q8N7X2 389 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 LINC00482Q8N8I6 264 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 KYQ8NBH2 561 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 LTV1Q96GA3 475 aaPredicted RBP4.83□□□□□ -1.64
HMGB3-203ENST00000430118 TMX3Q96JJ7 454 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 MRGPRX1Q96LB2 322 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 NT5C1BQ96P26 610 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 UHRF1Q96T88 793 aaPredicted RBP4.83□□□□□ -1.64
HMGB3-203ENST00000430118 CDK19Q9BWU1 502 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 TRIM54Q9BYV2 358 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 BCAS3Q9H6U6 928 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 MYO1AQ9UBC5 1043 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 DNAI1Q9UI46 699 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 MED16Q9Y2X0 877 aa4.83□□□□□ -1.64
HMGB3-203ENST00000430118 FAM208AQ9UK61 1670 aaKnown RBP4.83□□□□□ -1.64
HMGB3-203ENST00000430118 PCNTO95613 3336 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 TTC21AQ8NDW8 1320 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 FANCIQ9NVI1 1328 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 CLCA1A8K7I4 914 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 APOL1O14791 398 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 N4BP3O15049 544 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 FFAR2O15552 330 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 ADCY6O43306 1168 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 NCK2O43639 380 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 SKAP2O75563 359 aaPredicted RBP4.82□□□□□ -1.64
HMGB3-203ENST00000430118 GLI1P08151 1106 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 DDCP20711 480 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 PRDX5P30044 214 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 VIPR1P32241 457 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 CHKAP35790 457 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 FOXO1Q12778 655 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 PPFIA1Q13136 1202 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms