RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 ARL4DP49703 201 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 TTC39BQ5VTQ0 682 aaPredicted RBP13.38□□□□□ -0.27
LDB3-205ENST00000429277 IL31Q6EBC2 164 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 ZNF512Q96ME7 567 aaPredicted RBP13.38□□□□□ -0.27
LDB3-205ENST00000429277 POLD4Q9HCU8 107 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 PKP3Q9Y446 797 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 NBPF26B4DH59 902 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 TCP11X1B4DZS4 312 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 TBC1D4O60343 1298 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 PDHBP11177 359 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 HARS2P49590 506 aaKnown RBP13.38□□□□□ -0.27
LDB3-205ENST00000429277 FOXD4Q12950 439 aaPredicted RBP13.38□□□□□ -0.27
LDB3-205ENST00000429277 NR1I3Q14994 352 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 CNGA3Q16281 694 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 ANKMY2Q8IV38 441 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 NBPF15Q8N660 670 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 DAGLBQ8NCG7 672 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 LRRC1Q9BTT6 524 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 CLCA2Q9UQC9 943 aa13.38□□□□□ -0.27
LDB3-205ENST00000429277 ALKQ9UM73 1620 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 RASSF10A6NK89 507 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 PSMD14O00487 310 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 C6orf222P0C671 652 aaPredicted RBP13.37□□□□□ -0.27
LDB3-205ENST00000429277 ILF2Q12905 390 aaKnown RBP13.37□□□□□ -0.27
LDB3-205ENST00000429277 TTLL9Q3SXZ7 439 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 CENPPQ6IPU0 288 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 FAM9CQ8IZT9 166 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 TTC30BQ8N4P2 665 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 TMEM117Q9H0C3 514 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 MUC3BQ9H195 1237 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 GOLPH3Q9H4A6 298 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 TASP1Q9H6P5 420 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 TRPC7Q9HCX4 862 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.37□□□□□ -0.27
LDB3-205ENST00000429277 AURKCQ9UQB9 309 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 MEFVO15553 781 aaPredicted RBP13.37□□□□□ -0.27
LDB3-205ENST00000429277 STIP1P31948 543 aaKnown RBP13.37□□□□□ -0.27
LDB3-205ENST00000429277 ARHGAP15Q53QZ3 475 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 C6orf10Q5SRN2 563 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 LMBRD2Q68DH5 695 aaPredicted RBP13.37□□□□□ -0.27
LDB3-205ENST00000429277 SDE2Q6IQ49 451 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 MOXD1Q6UVY6 613 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 ZNF668Q96K58 619 aaPredicted RBP13.37□□□□□ -0.27
LDB3-205ENST00000429277 AAASQ9NRG9 546 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 UBQLN1Q9UMX0 589 aaKnown RBP13.37□□□□□ -0.27
LDB3-205ENST00000429277 A0A1B0GW55 424 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 F5H423 210 aaPredicted RBP13.37□□□□□ -0.27
LDB3-205ENST00000429277 PRRG1O14668 218 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 DUX4L2P0CJ85 424 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 DUX4L3P0CJ86 424 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 DUX4L4P0CJ87 422 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 DUX4L5P0CJ88 424 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 DUX4L6P0CJ89 424 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 DUX4L7P0CJ90 424 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 TAF6P49848 677 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 DAB2P98082 770 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 SCARF1Q14162 830 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 DMC1Q14565 340 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 VPS72Q15906 364 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 SPDYAQ5MJ70 313 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 PTRHD1Q6GMV3 140 aaKnown RBP13.37□□□□□ -0.27
LDB3-205ENST00000429277 CDC42EP5Q6NZY7 148 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 STOX1Q6ZVD7 989 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 GPRC5AQ8NFJ5 357 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 PABPC5Q96DU9 382 aaKnown RBP13.37□□□□□ -0.27
LDB3-205ENST00000429277 SPATA17Q96L03 361 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 DUX4Q9UBX2 424 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 SPATA31A6Q5VVP1 1343 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 GSNP06396 782 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 PTK7Q13308 1070 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 KBTBD12Q3ZCT8 623 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 ATP6V0D2Q8N8Y2 350 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 CPA5Q8WXQ8 436 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 NMRK1Q9NWW6 199 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 TMEM161AQ9NX61 479 aa13.37□□□□□ -0.27
LDB3-205ENST00000429277 MYMKA6NI61 221 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 FOXN1O15353 648 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 CYP2C9P11712 490 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 GUCY1A2P33402 732 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 FNTAP49354 379 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 PCYT1AP49585 367 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 SKOR1P84550 965 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 TRIM69Q86WT6 500 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 PPIL6Q8IXY8 311 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 SRPK1Q96SB4 655 aaKnown RBP13.36□□□□□ -0.27
LDB3-205ENST00000429277 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.36□□□□□ -0.27
LDB3-205ENST00000429277 TRPC5OSA6NMA1 111 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 H2AFYO75367 372 aaKnown RBP13.36□□□□□ -0.27
LDB3-205ENST00000429277 GARTP22102 1010 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 RGS2P41220 211 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 PLA2G4AP47712 749 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 ANXA11P50995 505 aaKnown RBP13.36□□□□□ -0.27
LDB3-205ENST00000429277 HIST2H2ACQ16777 129 aaPredicted RBP13.36□□□□□ -0.27
LDB3-205ENST00000429277 HIST2H2AA3Q6FI13 130 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 PRR5LQ6MZQ0 368 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 CATSPER3Q86XQ3 398 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 FEZF2Q8TBJ5 459 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 PLEKHA8Q96JA3 519 aa13.36□□□□□ -0.27
LDB3-205ENST00000429277 LBHD1Q9BQE6 289 aaPredicted RBP13.36□□□□□ -0.27
LDB3-205ENST00000429277 OSBPL1AQ9BXW6 950 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms