RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SYTL5Q8TDW5 730 aaPredicted RBP9.14□□□□□ -0.95
USP40-203ENST00000427112 LRRC37BQ96QE4 947 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 MTMR12Q9C0I1 747 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 GLT8D2Q9H1C3 349 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 NENFQ9UMX5 172 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 ARL2BPQ9Y2Y0 163 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 NUB1Q9Y5A7 615 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.14□□□□□ -0.95
USP40-203ENST00000427112 FDX1P10109 184 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 GM2AP17900 193 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 TUBP50607 506 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 MXRA7P84157 204 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 SEMA3FQ13275 785 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 PEX6Q13608 980 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 TDRD10Q5VZ19 366 aaKnown RBP9.14□□□□□ -0.95
USP40-203ENST00000427112 YTHDF3Q7Z739 585 aaKnown RBP9.14□□□□□ -0.95
USP40-203ENST00000427112 CCDC60Q8IWA6 550 aaPredicted RBP9.14□□□□□ -0.95
USP40-203ENST00000427112 RBBP8NLQ8NC74 664 aaPredicted RBP9.14□□□□□ -0.95
USP40-203ENST00000427112 TMEM161BQ8NDZ6 487 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 PSPC1Q8WXF1 523 aaKnown RBP9.14□□□□□ -0.95
USP40-203ENST00000427112 MOCOSQ96EN8 888 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 SMC6Q96SB8 1091 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 KIAA1586Q9HCI6 787 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.14□□□□□ -0.95
USP40-203ENST00000427112 ZNF541Q9H0D2 1346 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 LAMB2P55268 1798 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 BTNL10A8MVZ5 291 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 MEI4A8MW99 385 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 MGRN1O60291 552 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 CIITAP33076 1130 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 NOVP48745 357 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 RGS7P49802 495 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 PGGT1BP53609 377 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 PSMC5P62195 406 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 CLEC16AQ2KHT3 1053 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 ANKRD20A2Q5SQ80 823 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 ANKRD20A1Q5TYW2 823 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 ANKRD20A3Q5VUR7 823 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 TATDN1Q6P1N9 297 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 SULF1Q8IWU6 871 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 PALM2Q8IXS6 379 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 ZC3H3Q8IXZ2 948 aaKnown RBP9.14□□□□□ -0.95
USP40-203ENST00000427112 UBA3Q8TBC4 463 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 SHC3Q92529 594 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 MBOAT7Q96N66 472 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 FAM111AQ96PZ2 611 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 MSTO1Q9BUK6 570 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 TMEM206Q9H813 350 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 AGO4Q9HCK5 861 aaKnown RBP9.14□□□□□ -0.95
USP40-203ENST00000427112 PCYOX1Q9UHG3 505 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 CHKBQ9Y259 395 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 C15orf41Q9Y2V0 281 aa9.14□□□□□ -0.95
USP40-203ENST00000427112 ARFGEF1Q9Y6D6 1849 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 C5orf60A6NFR6 353 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 DHX15O43143 795 aaKnown RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 CAP2P40123 477 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 RANBP1P43487 201 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 GSCP56915 257 aaPredicted RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 CRADDP78560 199 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 OGDHQ02218 1023 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 CNTN2Q02246 1040 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 MAPK6Q16659 721 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 TMEM63BQ5T3F8 832 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 SNRNP48Q6IEG0 339 aaKnown RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 C3orf62Q6ZUJ4 267 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 CCDC89Q8N998 374 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 ATL2Q8NHH9 583 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 UTP4Q969X6 686 aaKnown RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 CCDC124Q96CT7 223 aaKnown RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 GMCL1Q96IK5 515 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 NLRP4Q96MN2 994 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 ACAP3Q96P50 834 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 CCDC77Q9BR77 488 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 PIDD1Q9HB75 910 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 RBAKQ9NYW8 714 aaPredicted RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 NOP53Q9NZM5 478 aaKnown RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 PARP2Q9UGN5 583 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 POLIQ9UNA4 740 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 MAD1L1Q9Y6D9 718 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 SPATA31A6Q5VVP1 1343 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 GTPBP10A4D1E9 387 aaKnown RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 CYB561D2O14569 222 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 EDN1P05305 212 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 UBTFL6P0CB48 400 aaPredicted RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 ZCCHC18P0CG32 403 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 SLC8A1P32418 973 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 MYL6P60660 151 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 IL9RQ01113 521 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 CYP24A1Q07973 514 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 STRIP1Q5VSL9 837 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 BZW1Q7L1Q6 419 aaKnown RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 PTPRN2Q92932 1015 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 PAGR1Q9BTK6 254 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 UNKQ9C0B0 810 aaKnown RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 RPAP3Q9H6T3 665 aaPredicted RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 SMYD3Q9H7B4 428 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 RNF146Q9NTX7 359 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 UGT1A9O60656 530 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 CST8O60676 142 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 ATP2A2P16615 1042 aaKnown RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms