RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ARHGEF3Q9NR81 526 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 DNAJC5BQ9UF47 199 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ADAMTS1Q9UHI8 967 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 TTC7AQ9ULT0 858 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 MRFAP1Q9Y605 127 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ADGRA2Q96PE1 1338 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 H7C0S8 307 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 APRTP07741 180 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 PRR29P0C7W0 189 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 YWHAQP27348 245 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 COASYQ13057 564 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ALG11Q2TAA5 492 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 CACHD1Q5VU97 1274 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 CDR2LQ86X02 465 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 MRPS31Q92665 395 aaKnown RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 FAR2Q96K12 515 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 MYLK2Q9H1R3 596 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 PLA2G4CQ9UP65 541 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 KDM6BO15054 1643 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 SOWAHDA6NJG2 315 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 IFRD1O00458 451 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 VWA5AO00534 786 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 HAUS5O94927 633 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 POLBP06746 335 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ETFBP38117 255 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 PKN2Q16513 984 aaKnown RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 EFHC1Q5JVL4 640 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 RESP18Q5W5W9 173 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 NLRP9Q7RTR0 991 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 DPP10Q8N608 796 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 C11orf70Q9BRQ4 267 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 NT5C1AQ9BXI3 368 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ELP3Q9H9T3 547 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 F5H423 210 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 DGAT1O75907 488 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 SOAT2O75908 522 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 SUPT20HL2P0C7V6 817 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 FAM200BP0CF97 657 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 PLA2G4AP47712 749 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 EPHB3P54753 998 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 GEMIN4P57678 1058 aaKnown RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 POU4F1Q01851 419 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 PRKAA1Q13131 559 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 MTMR2Q13614 643 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 NCF4Q15080 339 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 CAMKK1Q8N5S9 505 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ZNRF3Q9ULT6 936 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 NCKAP1Q9Y2A7 1128 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 TTC37Q6PGP7 1564 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 C17orf102A2RUQ5 167 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 PRR23AA6NEV1 266 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 KPNA6O60684 536 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 NBNO60934 754 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 RHOBTB3O94955 611 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ASS1P00966 412 aaKnown RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 GARTP22102 1010 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 OXCT1P55809 520 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 KRR1Q13601 381 aaKnown RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 NUP93Q8N1F7 819 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 IL17REQ8NFR9 667 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 USP6NLQ92738 828 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ELAC2Q9BQ52 826 aaKnown RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 BCL2L12Q9HB09 334 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 STAP2Q9UGK3 403 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ADAM30Q9UKF2 790 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 WDR19Q8NEZ3 1342 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 CDC42BPAQ5VT25 1732 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 GNRH1P01148 92 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 PSMC3P17980 439 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 MUTP22033 750 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 PLA2G4FQ68DD2 849 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 SFR1Q86XK3 245 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 CENPTQ96BT3 561 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 DNAJC1Q96KC8 554 aaKnown RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 EPN3Q9H201 632 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 EPC1Q9H2F5 836 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ABCA8O94911 1581 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 METP08581 1390 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 SASH1O94885 1247 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 RPN2P04844 631 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 HOXC6P09630 235 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 CUL3Q13618 768 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF284Q2VY69 593 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ARHGAP17Q68EM7 881 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 CCDC137Q6PK04 289 aaKnown RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 SETD3Q86TU7 594 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 TTLL11Q8NHH1 800 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 RFWD2Q8NHY2 731 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 JADE3Q92613 823 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 RNF25Q96BH1 459 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ATXN7L3BQ96GX2 97 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 CLMNQ96JQ2 1002 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 UBXN6Q9BZV1 441 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 SPAG6O75602 509 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 URODP06132 367 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 HMBSP08397 361 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 CKBP12277 381 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 UQCRBP14927 111 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 STARD3Q14849 445 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms