RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 AFMP43652 599 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 BRCC3P46736 316 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 ALDH1A3P47895 512 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 CASP5P51878 434 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 NDUFA8P51970 172 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 EPHB3P54753 998 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 MLLT6P55198 1093 aaPredicted RBP6.89□□□□□ -1.31
USP54-202ENST00000413442 ZXDAP98168 799 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 MYL7Q01449 175 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 ROR1Q01973 937 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 DPYDQ12882 1025 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 TDGQ13569 410 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 STIM1Q13586 685 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 CUL4BQ13620 913 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 CLUL1Q15846 466 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 SNRNP35Q16560 246 aaKnown RBP6.89□□□□□ -1.31
USP54-202ENST00000413442 EDRF1Q3B7T1 1238 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 KMT5BQ4FZB7 885 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 PABPC1LQ4VXU2 614 aaKnown RBP6.89□□□□□ -1.31
USP54-202ENST00000413442 SEZ6Q53EL9 994 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 FOXD4L5Q5VV16 416 aaPredicted RBP6.89□□□□□ -1.31
USP54-202ENST00000413442 C1orf228Q6PIY5 440 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 PRSS55Q6UWB4 352 aaPredicted RBP6.89□□□□□ -1.31
USP54-202ENST00000413442 RSPO2Q6UXX9 243 aaPredicted RBP6.89□□□□□ -1.31
USP54-202ENST00000413442 TRIM67Q6ZTA4 783 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 CSGALNACT2Q8N6G5 542 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 C3orf58Q8NDZ4 430 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 SPATA20Q8TB22 786 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 HASPINQ8TF76 798 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 FOXD4L4Q8WXT5 416 aaPredicted RBP6.89□□□□□ -1.31
USP54-202ENST00000413442 SYAP1Q96A49 352 aaPredicted RBP6.89□□□□□ -1.31
USP54-202ENST00000413442 C18orf25Q96B23 403 aaPredicted RBP6.89□□□□□ -1.31
USP54-202ENST00000413442 ZNF707Q96C28 371 aaPredicted RBP6.89□□□□□ -1.31
USP54-202ENST00000413442 FUBP3Q96I24 572 aaKnown RBP eCLIP6.89□□□□□ -1.31
USP54-202ENST00000413442 NELL2Q99435 816 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 MKNK1Q9BUB5 465 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 VRTNQ9H8Y1 702 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 GOLGA2P5Q9HBQ8 144 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 ABCB6Q9NP58 842 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 SLC39A2Q9NP94 309 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 CHMP5Q9NZZ3 219 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 WNT16Q9UBV4 365 aa6.89□□□□□ -1.31
USP54-202ENST00000413442 A0A0C4DFX4 3053 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 CYB561D2O14569 222 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 GABRDO14764 452 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 MEFVO15553 781 aaPredicted RBP6.88□□□□□ -1.31
USP54-202ENST00000413442 TACC1O75410 805 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 CPB1P15086 417 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 PFKLP17858 780 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 FSHRP23945 695 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 GTF2H1P32780 548 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 HOXD13P35453 343 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 ANP32AP39687 249 aaKnown RBP6.88□□□□□ -1.31
USP54-202ENST00000413442 PPP3CCP48454 512 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 CLCN5P51795 746 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 EPHA5P54756 1037 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 RPL10AP62906 217 aaKnown RBP6.88□□□□□ -1.31
USP54-202ENST00000413442 TFAMQ00059 246 aaKnown RBP6.88□□□□□ -1.31
USP54-202ENST00000413442 TSPY1Q01534 308 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 PFKPQ01813 784 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 KCNA1Q09470 495 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 STK4Q13043 487 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 VEPH1Q14D04 833 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 SGSM1Q2NKQ1 1148 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 FOXD4L6Q3SYB3 417 aaPredicted RBP6.88□□□□□ -1.31
USP54-202ENST00000413442 ZNF658Q5TYW1 1059 aaPredicted RBP6.88□□□□□ -1.31
USP54-202ENST00000413442 CENPPQ6IPU0 288 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 FOXD4L3Q6VB84 417 aaPredicted RBP6.88□□□□□ -1.31
USP54-202ENST00000413442 INTS8Q75QN2 995 aaKnown RBP6.88□□□□□ -1.31
USP54-202ENST00000413442 TRAPPC11Q7Z392 1133 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 LIMS2Q7Z4I7 341 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 FMR1NBQ8N0W7 255 aaPredicted RBP6.88□□□□□ -1.31
USP54-202ENST00000413442 KIAA1958Q8N8K9 716 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 FSIP1Q8NA03 581 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 ENGASEQ8NFI3 743 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 PARD3BQ8TEW8 1205 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 SHDQ96IW2 340 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 CBWD1Q9BRT8 395 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 CXCL16Q9H2A7 254 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 KCTD10Q9H3F6 313 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 CYP4F11Q9HBI6 524 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 CD320Q9NPF0 282 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 TRPV5Q9NQA5 729 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 TUBGCP4Q9UGJ1 667 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 CDH7Q9ULB5 785 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 AGAP1Q9UPQ3 857 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 UNC80Q8N2C7 3258 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 C2orf16Q68DN1 1984 aa6.88□□□□□ -1.31
USP54-202ENST00000413442 EYSQ5T1H1 3165 aa6.87□□□□□ -1.31
USP54-202ENST00000413442 WDR27A2RRH5 827 aa6.87□□□□□ -1.31
USP54-202ENST00000413442 ANHXE9PGG2 379 aa6.87□□□□□ -1.31
USP54-202ENST00000413442 F8W810 466 aa6.87□□□□□ -1.31
USP54-202ENST00000413442 KINO60870 393 aaKnown RBP6.87□□□□□ -1.31
USP54-202ENST00000413442 ECI2O75521 394 aa6.87□□□□□ -1.31
USP54-202ENST00000413442 CSPG5O95196 566 aa6.87□□□□□ -1.31
USP54-202ENST00000413442 ITGB3P05106 788 aa6.87□□□□□ -1.31
USP54-202ENST00000413442 NFICP08651 508 aa6.87□□□□□ -1.31
USP54-202ENST00000413442 SRFP11831 508 aa6.87□□□□□ -1.31
USP54-202ENST00000413442 KRT13P13646 458 aa6.87□□□□□ -1.31
USP54-202ENST00000413442 GLULP15104 373 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms