RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 KIAA0895Q8NCT3 520 aa20.6■□□□□ 0.89
SF3A1-202ENST00000411423 OR5B17Q8NGF7 314 aa20.6■□□□□ 0.89
SF3A1-202ENST00000411423 ING5Q8WYH8 240 aa20.6■□□□□ 0.89
SF3A1-202ENST00000411423 FGF13Q92913 245 aa20.6■□□□□ 0.89
SF3A1-202ENST00000411423 AGPAT3Q9NRZ7 376 aa20.6■□□□□ 0.89
SF3A1-202ENST00000411423 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.6■□□□□ 0.89
SF3A1-202ENST00000411423 CEP72Q9P209 647 aa20.6■□□□□ 0.89
SF3A1-202ENST00000411423 SIX4Q9UIU6 781 aa20.6■□□□□ 0.89
SF3A1-202ENST00000411423 KMT2EQ8IZD2 1858 aa20.6■□□□□ 0.89
SF3A1-202ENST00000411423 ZNF318Q5VUA4 2279 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 CYB561D2O14569 222 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 PRRG1O14668 218 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 ITGB3P05106 788 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 RHOP08100 348 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 ODC1P11926 461 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 POLR2BP30876 1174 aaKnown RBP20.59■□□□□ 0.89
SF3A1-202ENST00000411423 ELF1P32519 619 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 CCR2P41597 374 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 TAF6P49848 677 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 STK4Q13043 487 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 BMT2Q1RMZ1 405 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 PABPC1LQ4VXU2 614 aaKnown RBP20.59■□□□□ 0.89
SF3A1-202ENST00000411423 IER5LQ5T953 404 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 PARM1Q6UWI2 310 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 RTL10Q7L3V2 364 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 HS6ST3Q8IZP7 471 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 SLC44A3Q8N4M1 653 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 FGF14Q92915 247 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 TCEAL4Q96EI5 215 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 PYM1Q9BRP8 204 aaKnown RBP20.59■□□□□ 0.89
SF3A1-202ENST00000411423 MTMR12Q9C0I1 747 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 CDH7Q9ULB5 785 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 DUSP12Q9UNI6 340 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 AGAP1Q9UPQ3 857 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 HCN4Q9Y3Q4 1203 aa20.59■□□□□ 0.89
SF3A1-202ENST00000411423 OR6C75A6NL08 312 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 TWF1Q12792 350 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 GPR17Q13304 367 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 KMT5BQ4FZB7 885 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 PRSS36Q5K4E3 855 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 WSCD1Q658N2 575 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 STXBP4Q6ZWJ1 553 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 USP37Q86T82 979 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 NT5DC4Q86YG4 428 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 NPAS3Q8IXF0 933 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 FBXL6Q8N531 539 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 GZF1Q9H116 711 aaPredicted RBP20.58■□□□□ 0.89
SF3A1-202ENST00000411423 IGSF9Q9P2J2 1179 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 YIPF1Q9Y548 306 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 NUMBLQ9Y6R0 609 aa20.58■□□□□ 0.89
SF3A1-202ENST00000411423 UBE4BO95155 1302 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 MTMR11A4FU01 709 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 KPNA7A9QM74 516 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 MOSPD3O75425 235 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 SOAT2O75908 522 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 LRG1P02750 347 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 CEBPBP17676 345 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 LRRTM3Q86VH5 581 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 RDH13Q8NBN7 331 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 ATAD1Q8NBU5 361 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 MFSD14AQ96MC6 490 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 CORO1BQ9BR76 489 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 DNAJC25Q9H1X3 360 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 SLC27A5Q9Y2P5 690 aa20.57■□□□□ 0.88
SF3A1-202ENST00000411423 ZNF233A6NK53 670 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 KIAA0391O15091 583 aaKnown RBP20.56■□□□□ 0.88
SF3A1-202ENST00000411423 PTPN2P17706 415 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 SYKP43405 635 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 CYP2J2P51589 502 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 DUSP4Q13115 394 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 MYBPC2Q14324 1141 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 CENPPQ6IPU0 288 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 CSGALNACT2Q8N6G5 542 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 FSIP1Q8NA03 581 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 ZCWPW1Q9H0M4 648 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 AVENQ9NQS1 362 aaPredicted RBP20.56■□□□□ 0.88
SF3A1-202ENST00000411423 INTS13Q9NVM9 706 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 L1RE1Q9UN81 338 aa20.56■□□□□ 0.88
SF3A1-202ENST00000411423 COL4A3Q01955 1670 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 A0A1W2PQ27 194 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 A0A1W2PQ64 194 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 A0A1W2PQD8 194 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 HCRTO43612 131 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 NPR3P17342 541 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 PAX3P23760 479 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 BECN1Q14457 450 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 SV2CQ496J9 727 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 PLEKHO2Q8TD55 490 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 MCRS1Q96EZ8 462 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 LRRC3Q9BY71 257 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 OXCT2Q9BYC2 517 aaPredicted RBP20.55■□□□□ 0.88
SF3A1-202ENST00000411423 SCAND2PQ9GZW5 306 aaPredicted RBP20.55■□□□□ 0.88
SF3A1-202ENST00000411423 TMLHEQ9NVH6 421 aa20.55■□□□□ 0.88
SF3A1-202ENST00000411423 MRPS23Q9Y3D9 190 aaKnown RBP20.55■□□□□ 0.88
SF3A1-202ENST00000411423 CFHP08603 1231 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 GJA1P17302 382 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 BFSP1Q12934 665 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 SNRNP35Q16560 246 aaKnown RBP20.54■□□□□ 0.88
SF3A1-202ENST00000411423 CCDC142Q17RM4 750 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 KNOP1Q1ED39 458 aaKnown RBP20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms