RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 MMS22LQ6ZRQ5 1243 aa20.18■□□□□ 0.82
USP39-202ENST00000409025 TMEM35BQ8NCS4 154 aa20.18■□□□□ 0.82
USP39-202ENST00000409025 KRT35Q92764 455 aa20.18■□□□□ 0.82
USP39-202ENST00000409025 MTG1Q9BT17 334 aaPredicted RBP20.18■□□□□ 0.82
USP39-202ENST00000409025 EIF2AQ9BY44 585 aaKnown RBP20.18■□□□□ 0.82
USP39-202ENST00000409025 TRIM6Q9C030 488 aaPredicted RBP20.18■□□□□ 0.82
USP39-202ENST00000409025 ZNF518BQ9C0D4 1074 aa20.18■□□□□ 0.82
USP39-202ENST00000409025 SPC25Q9HBM1 224 aa20.18■□□□□ 0.82
USP39-202ENST00000409025 PCDHGC3Q9UN70 934 aa20.18■□□□□ 0.82
USP39-202ENST00000409025 SCINQ9Y6U3 715 aa20.18■□□□□ 0.82
USP39-202ENST00000409025 TRIP12Q14669 1992 aaPredicted RBP20.18■□□□□ 0.82
USP39-202ENST00000409025 MYADML2A6NDP7 307 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 MYO1FO00160 1098 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 MAP2K7O14733 419 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 MED7O43513 233 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 PAEPP09466 180 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 CTNNA1P35221 906 aaKnown RBP20.17■□□□□ 0.82
USP39-202ENST00000409025 PEX5P50542 639 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 CRYBB1P53674 252 aaPredicted RBP20.17■□□□□ 0.82
USP39-202ENST00000409025 CBX1P83916 185 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 ZNF211Q13398 564 aaPredicted RBP20.17■□□□□ 0.82
USP39-202ENST00000409025 C2CD6Q53TS8 623 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 PHLDB2Q86SQ0 1253 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 IFT20Q8IY31 132 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 TMEM130Q8N3G9 435 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 CEP83Q9Y592 693 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 PCDHA3Q9Y5H8 950 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 RALGAPA2Q2PPJ7 1873 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 HEXIM1O94992 359 aaKnown RBP20.17■□□□□ 0.82
USP39-202ENST00000409025 STAU1O95793 577 aaKnown RBP20.17■□□□□ 0.82
USP39-202ENST00000409025 TNFRSF8P28908 595 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 SLC1A1P43005 524 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 GUCY2FP51841 1108 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 PTP4A2Q12974 167 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 SNX27Q96L92 541 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 HINFPQ9BQA5 517 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 SDCBP2Q9H190 292 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 SMYD3Q9H7B4 428 aa20.17■□□□□ 0.82
USP39-202ENST00000409025 A0A0U1RQG5 324 aaPredicted RBP20.16■□□□□ 0.82
USP39-202ENST00000409025 KIF3CO14782 793 aa20.16■□□□□ 0.82
USP39-202ENST00000409025 CALB1P05937 261 aa20.16■□□□□ 0.82
USP39-202ENST00000409025 CD19P15391 556 aa20.16■□□□□ 0.82
USP39-202ENST00000409025 MMP8P22894 467 aa20.16■□□□□ 0.82
USP39-202ENST00000409025 MARCKSL1P49006 195 aa20.16■□□□□ 0.82
USP39-202ENST00000409025 CDH8P55286 799 aa20.16■□□□□ 0.82
USP39-202ENST00000409025 SEL1L2Q5TEA6 688 aa20.16■□□□□ 0.82
USP39-202ENST00000409025 PLEKHA7Q6IQ23 1121 aa20.16■□□□□ 0.82
USP39-202ENST00000409025 TAF2Q6P1X5 1199 aa20.16■□□□□ 0.82
USP39-202ENST00000409025 TMEM40Q8WWA1 233 aa20.16■□□□□ 0.82
USP39-202ENST00000409025 TFAP2BQ92481 460 aa20.16■□□□□ 0.82
USP39-202ENST00000409025 PIN4Q9Y237 131 aaKnown RBP20.16■□□□□ 0.82
USP39-202ENST00000409025 GOLGA6L10A0A0M3HER8 536 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 RAD51CO43502 376 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 MYBL2P10244 700 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 CDH5P33151 784 aaPredicted RBP20.15■□□□□ 0.82
USP39-202ENST00000409025 PLA2G4AP47712 749 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 RAD23BP54727 409 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 NOGQ13253 232 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 MAMLD1Q13495 774 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 CASP8Q14790 479 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 LLGL2Q6P1M3 1020 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 C1orf131Q8NDD1 294 aaKnown RBP20.15■□□□□ 0.82
USP39-202ENST00000409025 UPF3AQ9H1J1 476 aaKnown RBP20.15■□□□□ 0.82
USP39-202ENST00000409025 SLITRK6Q9H5Y7 841 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 FAM124BQ9H5Z6 455 aaPredicted RBP20.15■□□□□ 0.82
USP39-202ENST00000409025 GDF3Q9NR23 364 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 PARVAQ9NVD7 372 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 SART1O43290 800 aaKnown RBP20.15■□□□□ 0.82
USP39-202ENST00000409025 GLI1P08151 1106 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 RARBP10826 455 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 ITGA4P13612 1032 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 TNNT3P45378 269 aaPredicted RBP20.15■□□□□ 0.82
USP39-202ENST00000409025 RWDD2BP57060 319 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 GUCY2DQ02846 1103 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 PRKCZQ05513 592 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 MYO1EQ12965 1108 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 PPP2R5EQ16537 467 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 CPNE8Q86YQ8 564 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 GSPT2Q8IYD1 628 aaKnown RBP20.15■□□□□ 0.82
USP39-202ENST00000409025 TTC39CQ8N584 583 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 DDX47Q9H0S4 455 aaKnown RBP20.15■□□□□ 0.82
USP39-202ENST00000409025 EPB41L5Q9HCM4 733 aa20.15■□□□□ 0.82
USP39-202ENST00000409025 SEPT4O43236 478 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 CILPO75339 1184 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 HSPA6P17066 643 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 BEST2Q8NFU1 509 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 CCDC26Q8TAB7 109 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 AENQ8WTP8 325 aaKnown RBP20.14■□□□□ 0.81
USP39-202ENST00000409025 TRIM7Q9C029 511 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 NXF3Q9H4D5 531 aaKnown RBP20.14■□□□□ 0.81
USP39-202ENST00000409025 HES2Q9Y543 173 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 PROSCO94903 275 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 PGK1P00558 417 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 CXCL17Q6UXB2 119 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 SLC4A11Q8NBS3 891 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 FEZF2Q8TBJ5 459 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 WHAMMQ8TF30 809 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 TMEM176AQ96HP8 235 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 PLVAPQ9BX97 442 aa20.14■□□□□ 0.81
USP39-202ENST00000409025 CELF4Q9BZC1 486 aaKnown RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms