RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SLC9A1P19634 815 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 IL12RB1P42701 662 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 NPTX2P47972 431 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 ALDH9A1P49189 494 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 ITGA8P53708 1063 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 DRG2P55039 364 aaKnown RBP4.67□□□□□ -1.66
HMGB1-204ENST00000399489 SNX16P57768 344 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 HERVK_113P62684 666 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 HHEXQ03014 270 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 FSCN1Q16658 493 aaKnown RBP4.67□□□□□ -1.66
HMGB1-204ENST00000399489 PFKFB4Q16877 469 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 ZACNQ401N2 412 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 TOR2AQ5JU69 321 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 DAAM2Q86T65 1068 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 FUKQ8N0W3 1084 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 GALNT15Q8N3T1 639 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 ATG16L2Q8NAA4 619 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 SH3RF2Q8TEC5 729 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 IPCEF1Q8WWN9 437 aaPredicted RBP4.67□□□□□ -1.66
HMGB1-204ENST00000399489 RIN2Q8WYP3 895 aaPredicted RBP4.67□□□□□ -1.66
HMGB1-204ENST00000399489 CCDC34Q96HJ3 373 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 BOCQ9BWV1 1114 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 PCED1AQ9H1Q7 454 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 ZMAT4Q9H898 229 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 ATP8A2Q9NTI2 1148 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 TMCC3Q9ULS5 477 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 PGPEP1LA6NFU8 196 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 FAM90A27PA6NNH2 459 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 THP07101 528 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 MTHFD1P11586 935 aaKnown RBP4.66□□□□□ -1.66
HMGB1-204ENST00000399489 XBP1P17861 261 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 RPL17P18621 184 aaKnown RBP4.66□□□□□ -1.66
HMGB1-204ENST00000399489 ACO1P21399 889 aaKnown RBP4.66□□□□□ -1.66
HMGB1-204ENST00000399489 MMP14P50281 582 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 KCNQ1P51787 676 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 BPIFB3P59826 476 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 PLIN5Q00G26 463 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 SLC35G1Q2M3R5 365 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 USP39Q53GS9 565 aaKnown RBP4.66□□□□□ -1.66
HMGB1-204ENST00000399489 RILPL1Q5EBL4 403 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 FBXO47Q5MNV8 452 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 HECTD3Q5T447 861 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 MFSD4BQ5TF39 518 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 AGBL4Q5VU57 503 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 OTOP2Q7RTS6 562 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 KCNK18Q7Z418 384 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 RTKN2Q8IZC4 609 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 SSH3Q8TE77 659 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 RADILQ96JH8 1075 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 OR14A2Q96R54 314 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 COLEC11Q9BWP8 271 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 QRSL1Q9H0R6 528 aaKnown RBP4.66□□□□□ -1.66
HMGB1-204ENST00000399489 PLSCR4Q9NRQ2 329 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 TOMM22Q9NS69 142 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 DACT1Q9NYF0 836 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 LRFN1Q9P244 771 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 FEZ2Q9UHY8 353 aaPredicted RBP4.66□□□□□ -1.66
HMGB1-204ENST00000399489 ITGB1BP2Q9UKP3 347 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 CBLCQ9ULV8 474 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 SLC30A1Q9Y6M5 507 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.66□□□□□ -1.66
HMGB1-204ENST00000399489 A0A1W2PPC4 97 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 B4DLN1 442 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 MASP2O00187 686 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 IPO5O00410 1097 aaKnown RBP4.66□□□□□ -1.66
HMGB1-204ENST00000399489 MAN2B1O00754 1011 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 CLASP2O75122 1294 aaKnown RBP4.66□□□□□ -1.66
HMGB1-204ENST00000399489 KRT37O76014 449 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 HNRNPLP14866 589 aaKnown RBP eCLIP4.66□□□□□ -1.66
HMGB1-204ENST00000399489 PDE6AP16499 860 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 MCM7P33993 719 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 NFYCQ13952 458 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 RNF151Q2KHN1 245 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 FRMD7Q6ZUT3 714 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 USP30Q70CQ3 517 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 OSTM1Q86WC4 334 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 CCDC33Q8N5R6 958 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 ZMIZ2Q8NF64 920 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 HERVK_113Q902F9 699 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 ERCC4Q92889 916 aaPredicted RBP4.66□□□□□ -1.66
HMGB1-204ENST00000399489 SNX21Q969T3 373 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 VMP1Q96GC9 406 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 MPHOSPH8Q99549 860 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 SDF4Q9BRK5 362 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 BTBD2Q9BX70 525 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 CCDC68Q9H2F9 335 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 NELFAQ9H3P2 528 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 DBNDD1Q9H9R9 158 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 JMJD4Q9H9V9 463 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 PNPLA8Q9NP80 782 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 IRAK4Q9NWZ3 460 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 SIK3Q9Y2K2 1263 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 STXBP5LQ9Y2K9 1186 aa4.66□□□□□ -1.66
HMGB1-204ENST00000399489 A0A1W2PPH5 198 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 TCRBV5S4A2TA0A5A2 114 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 GOLGA6L3A6NEY3 463 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 TRIM64A6NGJ6 449 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 TRIM64BA6NI03 449 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 NPIPB8E9PQR5 432 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 SYT5O00445 386 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms