RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 PTGDRQ13258 359 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 DHX34Q14147 1143 aaKnown RBP6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 ZNF658Q5TYW1 1059 aaPredicted RBP6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 SNX30Q5VWJ9 437 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 FASTKD5Q7L8L6 764 aaKnown RBP6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 BNIPLQ7Z465 357 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 ZSCAN10Q96SZ4 725 aaPredicted RBP6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 YME1L1Q96TA2 773 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 TTC1Q99614 292 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 PHF20Q9BVI0 1012 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 SLC39A2Q9NP94 309 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 MBD2Q9UBB5 411 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 AKAP11Q9UKA4 1901 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 GOLGA8CPA6NN73 597 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 SPECC1L-ADORA2AF8WAN1 911 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 POLRMTO00411 1230 aaKnown RBP6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 PRKAB2O43741 272 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 SUPT3HO75486 399 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 FGFR2P21802 821 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 FECHP22830 423 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 CD97P48960 835 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 FXR1P51114 621 aaKnown RBP eCLIP6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 MRPS5P82675 430 aaKnown RBP6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 TRIM32Q13049 653 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 TCP11X2Q5H9J9 407 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 FAM83AQ86UY5 434 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 SMYD4Q8IYR2 804 aaPredicted RBP6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 SYNE4Q8N205 404 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 PJA1Q8NG27 643 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 IRGQQ8WZA9 623 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 RUNDC3BQ96NL0 473 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 PURBQ96QR8 312 aaKnown RBP6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 SMC6Q96SB8 1091 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 SLC39A1Q9NY26 324 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 AMACRQ9UHK6 382 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 SAR1BQ9Y6B6 198 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 GOLGA8SH3BPF8 625 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 H3BQF6 201 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 SLITRK3O94933 977 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 NDUFA10O95299 355 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 CD44P16070 742 aaKnown RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 PRKACAP17612 351 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 CDH3P22223 829 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 ABCG1P45844 678 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 TGFB2P61812 414 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 ATP2C1P98194 919 aaPredicted RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 CAP1Q01518 475 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 GRSF1Q12849 480 aaKnown RBP eCLIP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 HLFQ16534 295 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 MOGQ16653 247 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 RBM20Q5T481 1227 aaKnown RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 GRAMD4Q6IC98 578 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 PPM1NQ8N819 430 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 SCAIQ8N9R8 606 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 OR6P1Q8NGX9 317 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 RNF139Q8WU17 664 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 MAIP1Q8WWC4 291 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 L3MBTL3Q96JM7 780 aaPredicted RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 ART5Q96L15 291 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 CCDC42Q96M95 316 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 NUP58Q9BVL2 599 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 UBE2OQ9C0C9 1292 aaKnown RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 INTS2Q9H0H0 1204 aaKnown RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 VIPAS39Q9H9C1 493 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.95□□□□□ -1.31e-7■■□□□ 13.4
TM9SF4-202ENST00000398022 LRRD1A4D1F6 860 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 STX16-NPEPL1H3BU86 382 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 CDK2AP1O14519 115 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 FGF18O76093 207 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 DNTTP04053 509 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 EEF1GP26641 437 aaKnown RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 NOS3P29474 1203 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 LONP1P36776 959 aaKnown RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 VSNL1P62760 191 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 ARL6IP4Q66PJ3 421 aaKnown RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 NCAPH2Q6IBW4 605 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 WDR93Q6P2C0 686 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 APTXQ7Z2E3 356 aaKnown RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 MAMDC2Q7Z304 686 aaPredicted RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 DNAJB7Q7Z6W7 309 aaPredicted RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 GALNT7Q86SF2 657 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 HID1Q8IV36 788 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 NAXEQ8NCW5 288 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 CHFRQ96EP1 664 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 PNKPQ96T60 521 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 NUF2Q9BZD4 464 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 SNTG2Q9NY99 539 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 EYSQ5T1H1 3165 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 CAPN14A8MX76 684 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 F8W810 466 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 SOCS5O75159 536 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 PDGFRAP16234 1089 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 CTRB1P17538 263 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 POLR2GP62487 172 aaKnown RBP eCLIP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 CSNK2BP67870 215 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 FRG1Q14331 258 aaKnown RBP6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 CEP85LQ5SZL2 805 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 CTRB2Q6GPI1 263 aa6.95□□□□□ -1.3
TM9SF4-202ENST00000398022 OR7E24Q6IFN5 339 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms