RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 DNAJC24Q6P3W2 148 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 MTHFD1LQ6UB35 978 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 CATSPER4Q7RTX7 472 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 UBA3Q8TBC4 463 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 EXOC4Q96A65 974 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 FAM81BQ96LP2 452 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 ERP44Q9BS26 406 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 C16orf70Q9BSU1 422 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 PLVAPQ9BX97 442 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 TRIM6Q9C030 488 aaPredicted RBP11.83□□□□□ -0.52
TCOF1-203ENST00000394269 CHST7Q9NS84 486 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 PRMT7Q9NVM4 692 aaPredicted RBP11.83□□□□□ -0.52
TCOF1-203ENST00000394269 ADCY6O43306 1168 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 FAM189A1O60320 539 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 PSMC4P43686 418 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 CCL14Q16627 93 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 SMTNL2Q2TAL5 461 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 ZNF484Q5JVG2 852 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 SPRYD7Q5W111 196 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 GSTA5Q7RTV2 222 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 EMC1Q8N766 993 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 C1orf127Q8N9H9 656 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 SHCBP1Q8NEM2 672 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 PPTC7Q8NI37 304 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 CAVIN3Q969G5 261 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 KIF12Q96FN5 646 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 PARK7Q99497 189 aaKnown RBP11.83□□□□□ -0.52
TCOF1-203ENST00000394269 ADPGKQ9BRR6 497 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 FAM107BQ9H098 131 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 CXCL16Q9H2A7 254 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 CDHR5Q9HBB8 845 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 VTA1Q9NP79 307 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 HMGXB4Q9UGU5 601 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 RASAL2Q9UJF2 1139 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 GCLCP48506 637 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-203ENST00000394269 AARSP49588 968 aaKnown RBP eCLIP11.82□□□□□ -0.522e-6■■■□□ 15.7
TCOF1-203ENST00000394269 DYNLT1P63172 113 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 ZNF200P98182 395 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-203ENST00000394269 CENPCQ03188 943 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 TAF1CQ15572 869 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-203ENST00000394269 DGKDQ16760 1214 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 TTMPQ5BVD1 217 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 KCNT1Q5JUK3 1230 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 ALS2CLQ60I27 953 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 TMEM35BQ8NCS4 154 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-203ENST00000394269 MAF1Q9H063 256 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 ZWILCHQ9H900 591 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 MRPL47Q9HD33 250 aaKnown RBP11.82□□□□□ -0.52
TCOF1-203ENST00000394269 KLK14Q9P0G3 267 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 PARP14Q460N5 1801 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 ASAP2O43150 1006 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 DENND1BQ6P3S1 775 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 MON1BQ7L1V2 547 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 ZNF677Q86XU0 584 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 LRRC45Q96CN5 670 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 HERPUD2Q9BSE4 406 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 PCSK1NQ9UHG2 260 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 TNFSF13BQ9Y275 285 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 SBF1O95248 1867 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 ABLIM1O14639 778 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 MAGEB2O15479 319 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 PHF2O75151 1096 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 GRAP2O75791 330 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 NPTXRO95502 500 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 CYP1A1P04798 512 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-203ENST00000394269 MYL3P08590 195 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 AKAP5P24588 427 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 ECHS1P30084 290 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 SLCO1A2P46721 670 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 ACAP3Q96P50 834 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 ABHD16BQ9H3Z7 469 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 PARVAQ9NVD7 372 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 SNTG2Q9NY99 539 aa11.82□□□□□ -0.52
TCOF1-203ENST00000394269 COILP38432 576 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-203ENST00000394269 RPL21P46778 160 aaKnown RBP11.81□□□□□ -0.52
TCOF1-203ENST00000394269 SF3A3Q12874 501 aaKnown RBP eCLIP11.81□□□□□ -0.52
TCOF1-203ENST00000394269 SLC10A6Q3KNW5 377 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 MAMDC4Q6UXC1 1216 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 IQCKQ8N0W5 287 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 C7orf31Q8N865 590 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 FEZF2Q8TBJ5 459 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 CD101Q93033 1021 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 HPDLQ96IR7 371 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 TWNKQ96RR1 684 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 PDZD7Q9H5P4 517 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 PTPRHQ9HD43 1115 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 FAM114A2Q9NRY5 505 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 SIX4Q9UIU6 781 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 R3HDM2Q9Y2K5 976 aaKnown RBP11.81□□□□□ -0.52
TCOF1-203ENST00000394269 CHRNA3P32297 505 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 HNRNPH2P55795 449 aaKnown RBP11.81□□□□□ -0.52
TCOF1-203ENST00000394269 TMEM132DQ14C87 1099 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 SURF1Q15526 300 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 ZSCAN26Q16670 478 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 KRT71Q3SY84 523 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 C12orf29Q8N999 325 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 DNAJB3Q8WWF6 145 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 TRIM11Q96F44 468 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 XYLT2Q9H1B5 865 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms