RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 GPS1Q13098 491 aa19.53■□□□□ 0.72
CCDC3-201ENST00000378825 BIRC2Q13490 618 aa19.53■□□□□ 0.72
CCDC3-201ENST00000378825 CTC1Q2NKJ3 1217 aa19.53■□□□□ 0.72
CCDC3-201ENST00000378825 RFX8Q6ZV50 586 aa19.53■□□□□ 0.72
CCDC3-201ENST00000378825 NRG4Q8WWG1 115 aa19.53■□□□□ 0.72
CCDC3-201ENST00000378825 CADM1Q9BY67 442 aaKnown RBP19.53■□□□□ 0.72
CCDC3-201ENST00000378825 LIN7AO14910 233 aaPredicted RBP19.52■□□□□ 0.72
CCDC3-201ENST00000378825 AP1G2O75843 785 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 PROSCO94903 275 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 PIK3CAP42336 1068 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 ARSEP51690 589 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 HHATQ5VTY9 493 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 TXNRD3NBQ6F5E7 133 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 C12orf56Q8IXR9 622 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 KCTD17Q8N5Z5 321 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 DTX3LQ8TDB6 740 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 INPP5DQ92835 1189 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 PTPRN2Q92932 1015 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 GLIS2Q9BZE0 524 aaPredicted RBP19.52■□□□□ 0.72
CCDC3-201ENST00000378825 ARL8BQ9NVJ2 186 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 NMRK1Q9NWW6 199 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 ZNF148Q9UQR1 794 aa19.52■□□□□ 0.72
CCDC3-201ENST00000378825 DHX15O43143 795 aaKnown RBP19.52■□□□□ 0.71
CCDC3-201ENST00000378825 TYROBPO43914 113 aa19.52■□□□□ 0.71
CCDC3-201ENST00000378825 KRT36O76013 467 aa19.52■□□□□ 0.71
CCDC3-201ENST00000378825 MUTP22033 750 aa19.52■□□□□ 0.71
CCDC3-201ENST00000378825 MAN1A1P33908 653 aa19.52■□□□□ 0.71
CCDC3-201ENST00000378825 RFC5P40937 340 aa19.52■□□□□ 0.71
CCDC3-201ENST00000378825 RNF220Q5VTB9 566 aa19.52■□□□□ 0.71
CCDC3-201ENST00000378825 TMEM154Q6P9G4 183 aa19.52■□□□□ 0.71
CCDC3-201ENST00000378825 CLNKQ7Z7G1 428 aa19.52■□□□□ 0.71
CCDC3-201ENST00000378825 VTI1AQ96AJ9 217 aa19.52■□□□□ 0.71
CCDC3-201ENST00000378825 TMEM8AQ9HCN3 771 aa19.52■□□□□ 0.71
CCDC3-201ENST00000378825 FBXO6Q9NRD1 293 aaPredicted RBP19.52■□□□□ 0.71
CCDC3-201ENST00000378825 SAE1Q9UBE0 346 aaPredicted RBP19.52■□□□□ 0.71
CCDC3-201ENST00000378825 RPL7AP62424 266 aaKnown RBP19.51■□□□□ 0.71
CCDC3-201ENST00000378825 CENPCQ03188 943 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 ENDOVQ8N8Q3 282 aaKnown RBP19.51■□□□□ 0.71
CCDC3-201ENST00000378825 DNAJC9Q8WXX5 260 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 BSNDQ8WZ55 320 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 KIFAP3Q92845 792 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 CFAP57Q96MR6 1250 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 CYLDQ9NQC7 956 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 SLC17A7Q9P2U7 560 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 COQ4Q9Y3A0 265 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.51■□□□□ 0.71
CCDC3-201ENST00000378825 A0A0G2JND7 137 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 CFAP69A5D8W1 941 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 PRPF4O43172 522 aaKnown RBP eCLIP19.51■□□□□ 0.71
CCDC3-201ENST00000378825 DCTN3O75935 186 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 IFNB1P01574 187 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 SSTR1P30872 391 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 YWHABP31946 246 aaKnown RBP19.51■□□□□ 0.71
CCDC3-201ENST00000378825 ZNF516Q92618 1163 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 MXRA8Q9BRK3 442 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 DLGAP2Q9P1A6 1054 aa19.51■□□□□ 0.71
CCDC3-201ENST00000378825 PLSCR1O15162 318 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 P4HBP07237 508 aaKnown RBP19.5■□□□□ 0.71
CCDC3-201ENST00000378825 ALDH3A1P30838 453 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 MXRA7P84157 204 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 MFSD7Q6UXD7 560 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.5■□□□□ 0.71
CCDC3-201ENST00000378825 AGBL1Q96MI9 1066 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 MOV10L1Q9BXT6 1211 aaKnown RBP19.5■□□□□ 0.71
CCDC3-201ENST00000378825 DNALI1O14645 258 aaPredicted RBP19.5■□□□□ 0.71
CCDC3-201ENST00000378825 ENTPD3O75355 529 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 GNAT1P11488 350 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 NSFP46459 744 aaKnown RBP19.5■□□□□ 0.71
CCDC3-201ENST00000378825 GPX6P59796 221 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 PDIA2Q13087 525 aaKnown RBP19.5■□□□□ 0.71
CCDC3-201ENST00000378825 RCN1Q15293 331 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 MUM1Q2TAK8 710 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 STYK1Q6J9G0 422 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 C4orf50Q6ZRC1 276 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 MON1BQ7L1V2 547 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 RELL1Q8IUW5 271 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 TMEM121Q9BTD3 319 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 TMEM39BQ9GZU3 492 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 TBX20Q9UMR3 447 aa19.5■□□□□ 0.71
CCDC3-201ENST00000378825 DENND3A2RUS2 1198 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 LIASO43766 372 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 SMIM24O75264 130 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 ATP5HO75947 161 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 FKBP1AP62942 108 aaKnown RBP19.49■□□□□ 0.71
CCDC3-201ENST00000378825 KPNB1Q14974 876 aaKnown RBP19.49■□□□□ 0.71
CCDC3-201ENST00000378825 MSS51Q4VC12 460 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 ACSBG2Q5FVE4 666 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 TTC7BQ86TV6 843 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 LRRC6Q86X45 466 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 TMEM161BQ8NDZ6 487 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 WDR60Q8WVS4 1066 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 MAIP1Q8WWC4 291 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 ABHD2P08910 425 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 PTPN4P29074 926 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 MAMLD1Q13495 774 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 TFDP1Q14186 410 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 WDR72Q3MJ13 1102 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 NLRX1Q86UT6 975 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 RHOT1Q8IXI2 618 aa19.49■□□□□ 0.71
CCDC3-201ENST00000378825 FAM213AQ9BRX8 229 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms