RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 CCDC126Q96EE4 140 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 EGFL8Q99944 293 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 SPATA16Q9BXB7 569 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 DMTF1Q9Y222 760 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 B4E1Z4 1266 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 SRGAP2O75044 1071 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 TOP3BO95985 862 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 POLR2MP0CAP2 368 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 PTPN4P29074 926 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 CHN2P52757 468 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 NR1H2P55055 460 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 RALGDSQ12967 914 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 NFYCQ13952 458 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 CCDC184Q52MB2 194 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 MDH1BQ5I0G3 518 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 SWT1Q5T5J6 900 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 POC5Q8NA72 575 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 RIOK2Q9BVS4 552 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 TMEM138Q9NPI0 162 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 DDX25Q9UHL0 483 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 RCOR1Q9UKL0 485 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 LRRN2O75325 713 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 NPM3O75607 178 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 SEC24AO95486 1093 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 RPN2P04844 631 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 LDHBP07195 334 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 PCP11498 1178 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 VAV1P15498 845 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 SLC9A3P48764 834 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 NCAPHQ15003 741 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 DPCR1Q3MIW9 517 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 APPBP2Q92624 585 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 CENPIQ92674 756 aaPredicted RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 WNK4Q96J92 1243 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 SLC39A2Q9NP94 309 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 POLG2Q9UHN1 485 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 RAPGEFL1Q9UHV5 662 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 UBA6A0AVT1 1052 aaPredicted RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 E9PBE3 544 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 SLC26A4O43511 780 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 SCGNO76038 276 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 ROR1Q01973 937 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 DNAJC3Q13217 504 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 SYTL3Q4VX76 610 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 GAS2L3Q86XJ1 694 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 BLIDQ8IZY5 108 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 SEC31BQ9NQW1 1179 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 CD3EAPO15446 510 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 PTCD1O75127 700 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 SLC16A1P53985 500 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 SP4Q02446 784 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 CBFBQ13951 182 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 ABCB5Q2M3G0 1257 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 TSPYL6Q8N831 410 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 APBB2Q92870 758 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 AIF1LQ9BQI0 150 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 COMMD8Q9NX08 183 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 GRID1Q9ULK0 1009 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 NSFL1CQ9UNZ2 370 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 NCOA2Q15596 1464 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 YEATS2Q9ULM3 1422 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 EFCAB5A4FU69 1503 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 TIMM44O43615 452 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 FEN1P39748 380 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 CRKP46108 304 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 ITGA9Q13797 1035 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 EFHC1Q5JVL4 640 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 MSANTD3Q96H12 275 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 DNAJC7Q99615 494 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 DCUN1D5Q9BTE7 237 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 VPS33BQ9H267 617 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 NCOA5Q9HCD5 579 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 ASNSD1Q9NWL6 643 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 SRP68Q9UHB9 627 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 AK5Q9Y6K8 562 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 H7C2Y5 167 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 RGS10O43665 173 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 FSBPO95073 299 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 CLTBP09497 229 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 RFC5P40937 340 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 MYCBPAPQ8TBZ2 947 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 DLG3Q92796 817 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 POP5Q969H6 163 aaKnown RBP9.1□□□□□ -0.95
LIG3-202ENST00000378526 PFDN5Q99471 154 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 MXD3Q9BW11 206 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 GIN1Q9NXP7 522 aa9.1□□□□□ -0.95
LIG3-202ENST00000378526 PRPF4O43172 522 aaKnown RBP eCLIP9.09□□□□□ -0.95
LIG3-202ENST00000378526 PCNAP12004 261 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 PTPN1P18031 435 aaKnown RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 ITIH2P19823 946 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 C12orf66Q96MD2 445 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 PLEKHG4BQ96PX9 1271 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 BFARQ9NZS9 450 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 NINQ8N4C6 2090 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 ATXN2Q99700 1313 aaKnown RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 H3BNX3 289 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 KCNK1O00180 336 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 CCNKO75909 580 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 SNRPA1P09661 255 aaKnown RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 MTFR1Q15390 333 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms