RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SMOC2Q9H3U7 446 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 JKAMPQ9P055 326 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 NIPSNAP3AQ9UFN0 247 aaPredicted RBP2.95□□□□□ -1.94
VPS13A-206ENST00000376646 DMTF1Q9Y222 760 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 A0A1W2PS29 197 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 F2RL2O00254 374 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 ZRANB2O95218 330 aaKnown RBP eCLIP2.94□□□□□ -1.94
VPS13A-206ENST00000376646 FOLR3P41439 243 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 DSC2Q02487 901 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 ZNF844Q08AG5 666 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 SNAPC2Q13487 334 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 ATP2B3Q16720 1220 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 AKNAD1Q5T1N1 836 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 KAZNQ674X7 775 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 TAPT1Q6NXT6 567 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 CLNKQ7Z7G1 428 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 AMIGO2Q86SJ2 522 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 SLC9A6Q92581 669 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 C1orf43Q9BWL3 253 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 CPNE5Q9HCH3 593 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 INTS13Q9NVM9 706 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 FRMD4BQ9Y2L6 1034 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 SHTN1A0MZ66 631 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 VPS4BO75351 444 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 RBMXL2O75526 392 aaKnown RBP2.94□□□□□ -1.94
VPS13A-206ENST00000376646 MALP21145 153 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 ELLP55199 621 aaPredicted RBP2.94□□□□□ -1.94
VPS13A-206ENST00000376646 RPS7P62081 194 aaKnown RBP2.94□□□□□ -1.94
VPS13A-206ENST00000376646 DYRK1AQ13627 763 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 CCDC93Q567U6 631 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 TSTD2Q5T7W7 516 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 PUS7Q96PZ0 661 aaKnown RBP2.94□□□□□ -1.94
VPS13A-206ENST00000376646 AGAP1Q9UPQ3 857 aa2.94□□□□□ -1.94
VPS13A-206ENST00000376646 CCDC195A0A1B0GUA6 201 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 PRSS29PA6NIE9 313 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 LINC00473A8K010 186 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 ZNF785A8K8V0 405 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 NT5C1B-RDH14C9J2C7 533 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 SGTAO43765 313 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 NCLP19338 710 aaKnown RBP2.93□□□□□ -1.94
VPS13A-206ENST00000376646 EFCAB2Q5VUJ9 269 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 KIAA0895LQ68EN5 471 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 NSUN6Q8TEA1 469 aaKnown RBP2.93□□□□□ -1.94
VPS13A-206ENST00000376646 SSH1Q8WYL5 1049 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 DDB2Q92466 427 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 SNX19Q92543 992 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 TRIB1Q96RU8 372 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 PCDHA3Q9Y5H8 950 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 MRFAP1Q9Y605 127 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 C1RP00736 705 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 PDHA1P08559 390 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 SRGNP10124 158 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 LPOP22079 712 aaPredicted RBP2.93□□□□□ -1.94
VPS13A-206ENST00000376646 ANXA11P50995 505 aaKnown RBP2.93□□□□□ -1.94
VPS13A-206ENST00000376646 EXOSC10Q01780 885 aaKnown RBP2.93□□□□□ -1.94
VPS13A-206ENST00000376646 RAB39AQ14964 217 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 TXNRD1Q16881 649 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 RNF187Q5TA31 235 aaPredicted RBP2.93□□□□□ -1.94
VPS13A-206ENST00000376646 SLC4A10Q6U841 1118 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 TMPRSS9Q7Z410 1059 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 ARPP21Q9UBL0 812 aaPredicted RBP2.93□□□□□ -1.94
VPS13A-206ENST00000376646 ADAM21Q9UKJ8 722 aa2.93□□□□□ -1.94
VPS13A-206ENST00000376646 POLRMTO00411 1230 aaKnown RBP2.92□□□□□ -1.94
VPS13A-206ENST00000376646 PPM1GO15355 546 aaPredicted RBP2.92□□□□□ -1.94
VPS13A-206ENST00000376646 KIF20AO95235 890 aa2.92□□□□□ -1.94
VPS13A-206ENST00000376646 GJB1P08034 283 aa2.92□□□□□ -1.94
VPS13A-206ENST00000376646 ZNF135P52742 658 aaPredicted RBP2.92□□□□□ -1.94
VPS13A-206ENST00000376646 SH2D3CQ8N5H7 860 aa2.92□□□□□ -1.94
VPS13A-206ENST00000376646 HEPHQ9BQS7 1158 aa2.92□□□□□ -1.94
VPS13A-206ENST00000376646 ASPSCR1Q9BZE9 553 aa2.92□□□□□ -1.94
VPS13A-206ENST00000376646 SLC17A6Q9P2U8 582 aa2.92□□□□□ -1.94
VPS13A-206ENST00000376646 DKK3Q9UBP4 350 aa2.92□□□□□ -1.94
VPS13A-206ENST00000376646 NR2E3Q9Y5X4 410 aa2.92□□□□□ -1.94
VPS13A-206ENST00000376646 WASHC2CQ9Y4E1 1318 aa2.92□□□□□ -1.94
VPS13A-206ENST00000376646 MANSC4A6NHS7 340 aaPredicted RBP2.91□□□□□ -1.94
VPS13A-206ENST00000376646 MPPED1O15442 326 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 PROM1O43490 865 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 GRIA3P42263 894 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 NPTX2P47972 431 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 LRCH2Q5VUJ6 765 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 TAF2Q6P1X5 1199 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 ZNF788Q6ZQV5 615 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 MICALCLQ6ZW33 695 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 CATIPQ7Z7H3 387 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 RASAL3Q86YV0 1011 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 FAM9AQ8IZU1 332 aaPredicted RBP2.91□□□□□ -1.94
VPS13A-206ENST00000376646 B3GALNT2Q8NCR0 500 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 TNPO1Q92973 898 aaKnown RBP2.91□□□□□ -1.94
VPS13A-206ENST00000376646 GPATCH3Q96I76 525 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 UROC1Q96N76 676 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 SMOQ99835 787 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 BRD9Q9H8M2 597 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 CGB1A6NKQ9 187 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 F5H697 171 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 AHSGP02765 367 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 ABCG1P45844 678 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 TOB1P50616 345 aaPredicted RBP2.91□□□□□ -1.94
VPS13A-206ENST00000376646 EIF2B5Q13144 721 aaKnown RBP2.91□□□□□ -1.94
VPS13A-206ENST00000376646 BOP1Q14137 746 aaKnown RBP2.91□□□□□ -1.94
VPS13A-206ENST00000376646 TMEM119Q4V9L6 283 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms