RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 MIR1-1HGQ9H1L0 117 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 GREM2Q9H772 168 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 BRD9Q9H8M2 597 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 MAGEF1Q9HAY2 307 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 MRPL17Q9NRX2 175 aaKnown RBP9.05□□□□□ -0.96
SYNE1-206ENST00000367253 FAM207AQ9NSI2 230 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-206ENST00000367253 ZNF180Q9UJW8 692 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 POC1B-GALNT4F8VUJ3 575 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 H0Y3Z8 333 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 MYBL1P10243 752 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 MYL4P12829 197 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 SLC11A2P49281 568 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 PPATQ06203 517 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 GIT2Q14161 759 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 PABPC1LQ4VXU2 614 aaKnown RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 TAF1BQ53T94 588 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 LVRNQ6Q4G3 990 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 JAMLQ86YT9 394 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 GIPC2Q8TF65 315 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 TRIM15Q9C019 465 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 ASCC2Q9H1I8 757 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 CNTNAP4Q9C0A0 1308 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 TMEM265A0A087WTH1 108 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 PNMA6FA0A0J9YX94 578 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 KIAA0391O15091 583 aaKnown RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 NVLO15381 856 aaKnown RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 SERPINB10P48595 397 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 ARHGDIAP52565 204 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 AP1B1Q10567 949 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 CNGA3Q16281 694 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 ZNF654Q8IZM8 581 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 ALKBH8Q96BT7 664 aaKnown RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 GSDMAQ96QA5 445 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 MPP6Q9NZW5 540 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 TMEM63CQ9P1W3 806 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 RASGRF2O14827 1237 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 CALB1P05937 261 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 MAGEA8P43361 318 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 GEMIN4P57678 1058 aaKnown RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 TGM3Q08188 693 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 SNX30Q5VWJ9 437 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 TBC1D9BQ66K14 1250 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 PRR5LQ6MZQ0 368 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 AHI1Q8N157 1196 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 U2AF1L4Q8WU68 220 aaKnown RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 NELFBQ8WX92 580 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 TUBGCP3Q96CW5 907 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 CCDC90BQ9GZT6 254 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 ARMCX3Q9UH62 379 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 MRPS23Q9Y3D9 190 aaKnown RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 ITSN1Q15811 1721 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 MEIS1O00470 390 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 MPOP05164 745 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 HSPA6P17066 643 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 OSTNP61366 133 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 TUBA4AP68366 448 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 POLD3Q15054 466 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 STILQ15468 1287 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 NFE2Q16621 373 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 TEDDM1Q5T9Z0 273 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 ADCK2Q7Z695 626 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 MYO1HQ8N1T3 1032 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 FBXL13Q8NEE6 735 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 OR9Q1Q8NGQ5 310 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 CDCA5Q96FF9 252 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 ZNF274Q96GC6 653 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 KCNS3Q9BQ31 491 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 PRG3Q9Y2Y8 225 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-206ENST00000367253 SESN1Q9Y6P5 492 aa9.04□□□□□ -0.96
SYNE1-206ENST00000367253 C2CD2LO14523 706 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 GAS2O43903 313 aaKnown RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 PNPLA4P41247 253 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 CLCN6P51797 869 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 PMS2P54278 862 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 LRRC32Q14392 662 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 TRIM16LQ309B1 348 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 ZC3H12BQ5HYM0 836 aaKnown RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 SYT2Q8N9I0 419 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 MINDY2Q8NBR6 621 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 MEIS3Q99687 375 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 SLC9A2Q9UBY0 812 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 DCDC2Q9UHG0 476 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 MID2Q9UJV3 735 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 C2orf74A8MZ97 194 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 F8W810 466 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 PRPSAP2O60256 369 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 MTTPP55157 894 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 EIF3BP55884 814 aaKnown RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 PFKPQ01813 784 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 MTFR1Q15390 333 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 NOTUMQ6P988 496 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 FRA10AC1Q70Z53 315 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 SUSD6Q92537 303 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 KIAA1143Q96AT1 154 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 USP28Q96RU2 1077 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 CCDC3Q9BQI4 270 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 AP1M1Q9BXS5 423 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 BCO2Q9BYV7 579 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 C11orf49Q9H6J7 331 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms