RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 C1orf127Q8N9H9 656 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 CXorf38Q8TB03 319 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 PGLYRP2Q96PD5 576 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 PYM1Q9BRP8 204 aaKnown RBP19.86■□□□□ 0.77
CLN3-202ENST00000355477 CRISPLD1Q9H336 500 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 SLC39A2Q9NP94 309 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 HSPBP1Q9NZL4 362 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 DUSP12Q9UNI6 340 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 HPSEQ9Y251 543 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 ZFP37Q9Y6Q3 630 aaPredicted RBP19.86■□□□□ 0.77
CLN3-202ENST00000355477 OR6C75A6NL08 312 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 CYB561D2O14569 222 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 KLRC4O43908 158 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 PTPN2P17706 415 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 VCPP55072 806 aaKnown RBP19.85■□□□□ 0.77
CLN3-202ENST00000355477 IER5LQ5T953 404 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 CBWD2Q8IUF1 395 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 NELFCDQ8IXH7 590 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 OR10T2Q8NGX3 314 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 ING5Q8WYH8 240 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 FGF14Q92915 247 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 RTP3Q9BQQ7 232 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 RPP25Q9BUL9 199 aaKnown RBP19.85■□□□□ 0.77
CLN3-202ENST00000355477 OXCT2Q9BYC2 517 aaPredicted RBP19.85■□□□□ 0.77
CLN3-202ENST00000355477 CEP72Q9P209 647 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 MAFFQ9ULX9 164 aa19.85■□□□□ 0.77
CLN3-202ENST00000355477 PTPRJQ12913 1337 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 KPNA7A9QM74 516 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 NRG2O14511 850 aaPredicted RBP19.84■□□□□ 0.77
CLN3-202ENST00000355477 KIAA0391O15091 583 aaKnown RBP19.84■□□□□ 0.77
CLN3-202ENST00000355477 CLIC2O15247 247 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 ITGB3P05106 788 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 POLR2BP30876 1174 aaKnown RBP19.84■□□□□ 0.77
CLN3-202ENST00000355477 NDUFA8P51970 172 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 TWF1Q12792 350 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 DUSP4Q13115 394 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 GPR17Q13304 367 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 MYBPC2Q14324 1141 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 LMBRD2Q68DH5 695 aaPredicted RBP19.84■□□□□ 0.77
CLN3-202ENST00000355477 PARM1Q6UWI2 310 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 SUGP1Q8IWZ8 645 aaKnown RBP19.84■□□□□ 0.77
CLN3-202ENST00000355477 NPAS3Q8IXF0 933 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 CACTINQ8WUQ7 758 aaKnown RBP19.84■□□□□ 0.77
CLN3-202ENST00000355477 NXPE3Q969Y0 559 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 CORO1BQ9BR76 489 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 AVENQ9NQS1 362 aaPredicted RBP19.84■□□□□ 0.77
CLN3-202ENST00000355477 AGPAT3Q9NRZ7 376 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 AGAP1Q9UPQ3 857 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 MRPS23Q9Y3D9 190 aaKnown RBP19.84■□□□□ 0.77
CLN3-202ENST00000355477 NUMBLQ9Y6R0 609 aa19.84■□□□□ 0.77
CLN3-202ENST00000355477 UBE4BO95155 1302 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 ZNF233A6NK53 670 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 CDR1P51861 262 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 BMT2Q1RMZ1 405 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 SV2CQ496J9 727 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 PRSS36Q5K4E3 855 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 WSCD1Q658N2 575 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 CENPPQ6IPU0 288 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 HS6ST3Q8IZP7 471 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 CSGALNACT2Q8N6G5 542 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 RDH13Q8NBN7 331 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 ATAD1Q8NBU5 361 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 TCEAL4Q96EI5 215 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 MTMR12Q9C0I1 747 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 GDPD2Q9HCC8 539 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 SIX4Q9UIU6 781 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 SLC27A5Q9Y2P5 690 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 ATP6V1DQ9Y5K8 247 aa19.83■□□□□ 0.77
CLN3-202ENST00000355477 CACNA1HO95180 2353 aa19.83■□□□□ 0.76
CLN3-202ENST00000355477 FAM237AA0A1B0GTK4 181 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 MTMR11A4FU01 709 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 CFHP08603 1231 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 CEBPBP17676 345 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 AVPR2P30518 371 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 PLA2G5P39877 138 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 CCR2P41597 374 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 STK4Q13043 487 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 BECN1Q14457 450 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 TTC9BQ8N6N2 239 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 OR5B17Q8NGF7 314 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 MCRS1Q96EZ8 462 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 SCAND2PQ9GZW5 306 aaPredicted RBP19.82■□□□□ 0.76
CLN3-202ENST00000355477 ZCWPW1Q9H0M4 648 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 INTS13Q9NVM9 706 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 USP25Q9UHP3 1055 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 ITGA11Q9UKX5 1188 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 DSEQ9UL01 958 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 YIPF1Q9Y548 306 aa19.82■□□□□ 0.76
CLN3-202ENST00000355477 PNPLA4P41247 253 aa19.81■□□□□ 0.76
CLN3-202ENST00000355477 SYKP43405 635 aa19.81■□□□□ 0.76
CLN3-202ENST00000355477 CYP2J2P51589 502 aa19.81■□□□□ 0.76
CLN3-202ENST00000355477 KMT5BQ4FZB7 885 aa19.81■□□□□ 0.76
CLN3-202ENST00000355477 LRRTM3Q86VH5 581 aa19.81■□□□□ 0.76
CLN3-202ENST00000355477 METTL23Q86XA0 190 aa19.81■□□□□ 0.76
CLN3-202ENST00000355477 KIAA0895Q8NCT3 520 aa19.81■□□□□ 0.76
CLN3-202ENST00000355477 FAM122AQ96E09 287 aa19.81■□□□□ 0.76
CLN3-202ENST00000355477 ZNF512Q96ME7 567 aaPredicted RBP19.81■□□□□ 0.76
CLN3-202ENST00000355477 ZNF560Q96MR9 790 aa19.81■□□□□ 0.76
CLN3-202ENST00000355477 GOLPH3LQ9H4A5 285 aa19.81■□□□□ 0.76
CLN3-202ENST00000355477 KIAA1586Q9HCI6 787 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms