RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ANAPC5Q9UJX4 755 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 NEU2Q9Y3R4 380 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 ARIH2O95376 493 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 PRKCBP05771 671 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 GRM1Q13255 1194 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 CCDC38Q502W7 563 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 CDCA2Q69YH5 1023 aaPredicted RBP23.1■■□□□ 1.29
SHMT1-202ENST00000352886 ZNF365Q70YC5 407 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 CSADQ9Y600 493 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 OGTO15294 1046 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 DRD4P21917 467 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 BRD2P25440 801 aaKnown RBP23.1■■□□□ 1.29
SHMT1-202ENST00000352886 CAV1Q03135 178 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 MAPK6Q16659 721 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 HSDL1Q3SXM5 330 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 ATP13A4Q4VNC1 1196 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 CHADLQ6NUI6 762 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 CABS1Q96KC9 395 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 CISHQ9NSE2 258 aa23.1■■□□□ 1.29
SHMT1-202ENST00000352886 TCF4P15884 667 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 IRX3P78415 501 aaPredicted RBP23.09■■□□□ 1.29
SHMT1-202ENST00000352886 DUOXA2Q1HG44 320 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 ZFYVE27Q5T4F4 411 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 GKAP1Q5VSY0 366 aaPredicted RBP23.09■■□□□ 1.29
SHMT1-202ENST00000352886 ZBTB8OSQ8IWT0 167 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 CACNA2D3Q8IZS8 1091 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 PWWP2AQ96N64 755 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 NIF3L1Q9GZT8 377 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 INTS9Q9NV88 658 aaKnown RBP23.09■■□□□ 1.29
SHMT1-202ENST00000352886 PI4K2BG5E9Z4 385 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 TTC4O95801 387 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 MXD4Q14582 209 aaPredicted RBP23.09■■□□□ 1.29
SHMT1-202ENST00000352886 TAOK1Q7L7X3 1001 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 TCP11Q8WWU5 503 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 MCEEQ96PE7 176 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 GPR20Q99678 358 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 CPSF3Q9UKF6 684 aaKnown RBP23.09■■□□□ 1.29
SHMT1-202ENST00000352886 CAPN7Q9Y6W3 813 aa23.09■■□□□ 1.29
SHMT1-202ENST00000352886 MGAMO43451 1857 aa23.08■■□□□ 1.29
SHMT1-202ENST00000352886 TMEM191CA6NGB0 347 aa23.08■■□□□ 1.29
SHMT1-202ENST00000352886 CALB1P05937 261 aa23.08■■□□□ 1.29
SHMT1-202ENST00000352886 PGK2P07205 417 aa23.08■■□□□ 1.29
SHMT1-202ENST00000352886 TMEM191BP0C7N4 346 aa23.08■■□□□ 1.29
SHMT1-202ENST00000352886 NFX1Q12986 1120 aaKnown RBP23.08■■□□□ 1.29
SHMT1-202ENST00000352886 KYNUQ16719 465 aa23.08■■□□□ 1.29
SHMT1-202ENST00000352886 KAZNQ674X7 775 aa23.08■■□□□ 1.29
SHMT1-202ENST00000352886 CCDC89Q8N998 374 aa23.08■■□□□ 1.29
SHMT1-202ENST00000352886 KAT2BQ92831 832 aa23.08■■□□□ 1.29
SHMT1-202ENST00000352886 ZNF317Q96PQ6 595 aaPredicted RBP23.08■■□□□ 1.29
SHMT1-202ENST00000352886 ZBTB42B2RXF5 422 aa23.08■■□□□ 1.28
SHMT1-202ENST00000352886 NOP56O00567 594 aaKnown RBP23.08■■□□□ 1.28
SHMT1-202ENST00000352886 ABLIM1O14639 778 aa23.08■■□□□ 1.28
SHMT1-202ENST00000352886 IRF6O14896 467 aa23.08■■□□□ 1.28
SHMT1-202ENST00000352886 TFAMQ00059 246 aaKnown RBP23.08■■□□□ 1.28
SHMT1-202ENST00000352886 MCL1Q07820 350 aa23.08■■□□□ 1.28
SHMT1-202ENST00000352886 ZNF252P-AS1Q0IIN9 211 aa23.08■■□□□ 1.28
SHMT1-202ENST00000352886 TRPC3Q13507 836 aa23.08■■□□□ 1.28
SHMT1-202ENST00000352886 SGSM1Q2NKQ1 1148 aa23.08■■□□□ 1.28
SHMT1-202ENST00000352886 SCARA5Q6ZMJ2 495 aa23.08■■□□□ 1.28
SHMT1-202ENST00000352886 EXOC3L1Q86VI1 746 aa23.08■■□□□ 1.28
SHMT1-202ENST00000352886 NLGN2Q8NFZ4 835 aa23.08■■□□□ 1.28
SHMT1-202ENST00000352886 ZNF668Q96K58 619 aaPredicted RBP23.08■■□□□ 1.28
SHMT1-202ENST00000352886 PPME1Q9Y570 386 aa23.08■■□□□ 1.28
SHMT1-202ENST00000352886 FSBPO95073 299 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 LSM8O95777 96 aaKnown RBP23.07■■□□□ 1.28
SHMT1-202ENST00000352886 WEE2P0C1S8 567 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 KRT10P13645 584 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 CETN2P41208 172 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 DNAJC24Q6P3W2 148 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 GSTA5Q7RTV2 222 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 PRUNE1Q86TP1 453 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 RHPN2Q8IUC4 686 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 PRMT1Q99873 361 aaKnown RBP23.07■■□□□ 1.28
SHMT1-202ENST00000352886 MCM3APO60318 1980 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 IZUMO3Q5VZ72 239 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 GPAT2Q6NUI2 795 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 TMEM35BQ8NCS4 154 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 OTUD5Q96G74 571 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 SERPINB12Q96P63 405 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 SGIP1Q9BQI5 828 aa23.07■■□□□ 1.28
SHMT1-202ENST00000352886 PAPPA2Q9BXP8 1791 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 TCRBV5S1A1TA0A578 114 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 F8VP50 259 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 HOXC6P09630 235 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 ANK1P16157 1881 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 ATF7P17544 494 aaPredicted RBP23.06■■□□□ 1.28
SHMT1-202ENST00000352886 OSTNP61366 133 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 DCUN1D2Q6PH85 259 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 CCDC121Q6ZUS5 278 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 THNSL1Q8IYQ7 743 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 RCOR2Q8IZ40 523 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 RBM41Q96IZ5 413 aaKnown RBP23.06■■□□□ 1.28
SHMT1-202ENST00000352886 SLITRK1Q96PX8 696 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 ASCC2Q9H1I8 757 aaPredicted RBP23.06■■□□□ 1.28
SHMT1-202ENST00000352886 IVNS1ABPQ9Y6Y0 642 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 ADM5C9JUS6 153 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 GAS2O43903 313 aaKnown RBP23.06■■□□□ 1.28
SHMT1-202ENST00000352886 KRT1P04264 644 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 GJB1P08034 283 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 OGDHQ02218 1023 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms