RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 PGM1P36871 562 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 RASA3Q14644 834 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 QRICH1Q2TAL8 776 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 MOXD1Q6UVY6 613 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 SMIM5Q71RC9 77 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 LCA5Q86VQ0 697 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 MYLK4Q86YV6 388 aaPredicted RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 IFNLR1Q8IU57 520 aaPredicted RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 CCDC89Q8N998 374 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 NAT14Q8WUY8 206 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 ELMO3Q96BJ8 720 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 FAM163AQ96GL9 167 aaPredicted RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 CLPTM1LQ96KA5 538 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 FAM161BQ96MY7 647 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 FNBP1Q96RU3 617 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 CCDC28BQ9BUN5 200 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 PHACTR1Q9C0D0 580 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 EBF3Q9H4W6 596 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 PARVGQ9HBI0 331 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 ANAPC7Q9UJX3 599 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 PPM1HQ9ULR3 514 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 A8MXQ7 604 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 FCHO1O14526 889 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 OR6B1O95007 311 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 DLDP09622 509 aaKnown RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 PABPC4LP0CB38 370 aaKnown RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 ESRRAP11474 423 aaPredicted RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 TAL1P17542 331 aaPredicted RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 ARFIP2P53365 341 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 CENPCQ03188 943 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 TTLL12Q14166 644 aaPredicted RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 KRT72Q14CN4 511 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 Q4G0T1 1027 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 RIPOR1Q6ZS17 1223 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 RAPH1Q70E73 1250 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 TREML1Q86YW5 311 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 LARGE2Q8N3Y3 721 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 TCP10LQ8TDR4 215 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 MZB1Q8WU39 189 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 DDX1Q92499 740 aaKnown RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 KLF6Q99612 283 aaPredicted RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 CENPKQ9BS16 269 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 POLR3CQ9BUI4 534 aaPredicted RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 PLVAPQ9BX97 442 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 TRIM55Q9BYV6 548 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 OSBPL8Q9BZF1 889 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 PCIF1Q9H4Z3 704 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 VPS37BQ9H9H4 285 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 LARSQ9P2J5 1176 aaKnown RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 ANGPTL2Q9UKU9 493 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 LOC102724428A0A0B4J2F2 783 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 E5RJQ4 531 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 GOLGA8RI6L899 631 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 TBX3O15119 743 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 HNRNPRO43390 633 aaKnown RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 HARSP12081 509 aaKnown RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 GYS1P13807 737 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 ETS1P14921 441 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 CYP11B1P15538 503 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 MAPK4P31152 587 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 ARL4CP56559 192 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 SIK1P57059 783 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 GPX6P59796 221 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 BPIFB4P59827 614 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 GABPAQ06546 454 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 CCNG2Q16589 344 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 C2CD6Q53TS8 623 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 SLC10A5Q5PT55 438 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 SYDE2Q5VT97 1194 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 ALYREFQ86V81 257 aaKnown RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 SLC9A9Q8IVB4 645 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 FAM178BQ8IXR5 827 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 BBOF1Q8ND07 529 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 STKLD1Q8NE28 680 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 SHC3Q92529 594 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 OXNAD1Q96HP4 312 aaPredicted RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 IWS1Q96ST2 819 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 CYTH2Q99418 400 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 HSD17B14Q9BPX1 270 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 TUBB6Q9BUF5 446 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 TSSK1BQ9BXA7 367 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 NMUR2Q9GZQ4 415 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 MANSC1Q9H8J5 431 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 PSMC3IPQ9P2W1 217 aaPredicted RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 PLA2G4CQ9UP65 541 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 ZNF652Q9Y2D9 606 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 PCDHA1Q9Y5I3 950 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 CLUHO75153 1309 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 UBE4BO95155 1302 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 B2RBV5 119 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 F8W8V4 182 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 DNALI1O14645 258 aaPredicted RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 MAGEC1O60732 1142 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 SLITRK3O94933 977 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 ASLP04424 464 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 LDHCP07864 332 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 FAM200BP0CF97 657 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 SLURP2P0DP57 97 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 VAV1P15498 845 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 VAMP7P51809 220 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms