RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 NKX3-2P78367 333 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 FMO1Q01740 532 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 TMEM62Q0P6H9 643 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 MEI1Q5TIA1 1274 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 TAX1BP1Q86VP1 789 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 DNAAF5Q86Y56 855 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 PALB2Q86YC2 1186 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 SYCE1Q8N0S2 351 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 CNPY4Q8N129 248 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 TPCN2Q8NHX9 752 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 DDX1Q92499 740 aaKnown RBP13.67□□□□□ -0.22
CLK3-201ENST00000345005 PBKQ96KB5 322 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 GDAP1L1Q96MZ0 367 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 PCDHB18PQ96TA0 734 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 TLR10Q9BXR5 811 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 CFHR5Q9BXR6 569 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 TAS2R14Q9NYV8 317 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 GINS2Q9Y248 185 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 PCDHB4Q9Y5E5 795 aa13.67□□□□□ -0.22
CLK3-201ENST00000345005 MROH7Q68CQ1 1323 aa13.66□□□□□ -0.22
CLK3-201ENST00000345005 ACO1P21399 889 aaKnown RBP13.66□□□□□ -0.22
CLK3-201ENST00000345005 EIF4BP23588 611 aaKnown RBP13.66□□□□□ -0.22
CLK3-201ENST00000345005 GRM5P41594 1212 aa13.66□□□□□ -0.22
CLK3-201ENST00000345005 GPC5P78333 572 aa13.66□□□□□ -0.22
CLK3-201ENST00000345005 CACNB2Q08289 660 aaPredicted RBP13.66□□□□□ -0.22
CLK3-201ENST00000345005 HIC1Q14526 733 aa13.66□□□□□ -0.22
CLK3-201ENST00000345005 PDCD11Q14690 1871 aaKnown RBP13.66□□□□□ -0.22
CLK3-201ENST00000345005 TCEAL1Q15170 157 aa13.66□□□□□ -0.22
CLK3-201ENST00000345005 NT5DC4Q86YG4 428 aa13.66□□□□□ -0.22
CLK3-201ENST00000345005 RHOT2Q8IXI1 618 aa13.66□□□□□ -0.22
CLK3-201ENST00000345005 SLC35G2Q8TBE7 412 aa13.66□□□□□ -0.22
CLK3-201ENST00000345005 PPP1R13LQ8WUF5 828 aa13.66□□□□□ -0.22
CLK3-201ENST00000345005 FAXDC2Q96IV6 333 aa13.66□□□□□ -0.22
CLK3-201ENST00000345005 NIF3L1Q9GZT8 377 aa13.66□□□□□ -0.22
CLK3-201ENST00000345005 MYADML2A6NDP7 307 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 ABCB4P21439 1286 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 FGFR4P22455 802 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 HOXA11P31270 313 aaPredicted RBP13.65□□□□□ -0.22
CLK3-201ENST00000345005 CDR1P51861 262 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 CRYBB1P53674 252 aaPredicted RBP13.65□□□□□ -0.22
CLK3-201ENST00000345005 YWHAEP62258 255 aaKnown RBP13.65□□□□□ -0.22
CLK3-201ENST00000345005 MTMR3Q13615 1198 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 SLC10A6Q3KNW5 377 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 JADE1Q6IE81 842 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 TAF2Q6P1X5 1199 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 NOTUMQ6P988 496 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 SLC27A1Q6PCB7 646 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 SLFN11Q7Z7L1 901 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 GSPT2Q8IYD1 628 aaKnown RBP13.65□□□□□ -0.22
CLK3-201ENST00000345005 LRRC57Q8N9N7 239 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 P3H4Q92791 437 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 CABS1Q96KC9 395 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 ATP6V1G3Q96LB4 118 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 ZIM3Q96PE6 472 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 OSMRQ99650 979 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 CDHR5Q9HBB8 845 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 ACP6Q9NPH0 428 aa13.65□□□□□ -0.22
CLK3-201ENST00000345005 HEXIM1O94992 359 aaKnown RBP13.64□□□□□ -0.23
CLK3-201ENST00000345005 FTCDO95954 541 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 HSPA9P38646 679 aaKnown RBP13.64□□□□□ -0.23
CLK3-201ENST00000345005 HADHBP55084 474 aaKnown RBP13.64□□□□□ -0.23
CLK3-201ENST00000345005 ZNF200P98182 395 aaPredicted RBP13.64□□□□□ -0.23
CLK3-201ENST00000345005 TMEM132DQ14C87 1099 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 SNX17Q15036 470 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 CLEC16AQ2KHT3 1053 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 ZNF699Q32M78 642 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 TTMPQ5BVD1 217 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 ACAD10Q6JQN1 1059 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 TMEM270Q6UE05 265 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 CCDC50Q8IVM0 306 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 HDAC7Q8WUI4 952 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 THAP2Q9H0W7 228 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 ACTR5Q9H9F9 607 aaPredicted RBP13.64□□□□□ -0.23
CLK3-201ENST00000345005 PLEKHA5Q9HAU0 1116 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 RBM12Q9NTZ6 932 aaKnown RBP13.64□□□□□ -0.23
CLK3-201ENST00000345005 C2CD2Q9Y426 696 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 UMODL1Q5DID0 1318 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 H0YHG0 523 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 NCK2O43639 380 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 NPTXRO95502 500 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 PGK1P00558 417 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 NFICP08651 508 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 KRT19P08727 400 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 NR1D1P20393 614 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 ATICP31939 592 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 HNRNPH1P31943 449 aaKnown RBP13.64□□□□□ -0.23
CLK3-201ENST00000345005 LSP1P33241 339 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 LIG3P49916 1009 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 RPS6KA1Q15418 735 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 NBPF20Q3BBV1 942 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 TRIM72Q6ZMU5 477 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 UBR7Q8N806 425 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 RBBP8NLQ8NC74 664 aaPredicted RBP13.64□□□□□ -0.23
CLK3-201ENST00000345005 XYLT2Q9H1B5 865 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 PLEKHA4Q9H4M7 779 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 EPB41L5Q9HCM4 733 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 XPNPEP3Q9NQH7 507 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 RNF186Q9NXI6 227 aa13.64□□□□□ -0.23
CLK3-201ENST00000345005 GOLGA6L7A0A1B0GV03 622 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 FAM107AO95990 144 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms