RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 PRPF31Q8WWY3 499 aaKnown RBP12.6□□□□□ -0.39
USP1-201ENST00000339950 STMN2Q93045 179 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 LRRC37BQ96QE4 947 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 SMYD3Q9H7B4 428 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 NINJ2Q9NZG7 142 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 ZNRF3Q9ULT6 936 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 DSG3P32926 999 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 JAK3P52333 1124 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 BPIFB4P59827 614 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 KDSRQ06136 332 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 BMPR2Q13873 1038 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 KDELC2Q7Z4H8 507 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 FAF2Q96CS3 445 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 A0A1W2PPM1 405 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 CST3P01034 146 aaPredicted RBP12.6□□□□□ -0.39
USP1-201ENST00000339950 F7P08709 466 aaPredicted RBP12.6□□□□□ -0.39
USP1-201ENST00000339950 KRT3P12035 628 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 TNFRSF8P28908 595 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 NT5C2P49902 561 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 MOXD1Q6UVY6 613 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 ZDHHC24Q6UX98 284 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 LONP2Q86WA8 852 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 HACE1Q8IYU2 909 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 MREGQ8N565 214 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 TMEM35BQ8NCS4 154 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 MCPH1Q8NEM0 835 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 COPS5Q92905 334 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 AGAP3Q96P47 875 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 PXMP2Q9NR77 195 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 TXNDC16Q9P2K2 825 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 NUB1Q9Y5A7 615 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 CACNA1SQ13698 1873 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 STAT5BP51692 787 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 TFDP1Q14186 410 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 PSMD6Q15008 389 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 RBBP5Q15291 538 aaKnown RBP12.59□□□□□ -0.39
USP1-201ENST00000339950 MOB2Q70IA6 237 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 ACTL9Q8TC94 416 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 CFAP57Q96MR6 1250 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 TRAIPQ9BWF2 469 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 ACSS2Q9NR19 701 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 RPTORQ8N122 1335 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 CHD4Q14839 1912 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.59□□□□□ -0.39
USP1-201ENST00000339950 AVILO75366 819 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 TJP3O95049 919 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 STXBP2Q15833 593 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 HADHQ16836 314 aaKnown RBP12.59□□□□□ -0.39
USP1-201ENST00000339950 NPNTQ6UXI9 565 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 CENPUQ71F23 418 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 PPFIBP2Q8ND30 876 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 ZNF606Q8WXB4 792 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 CYP4F11Q9HBI6 524 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 NRBP2Q9NSY0 501 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 ARMCX1Q9P291 453 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 PPARGC1AQ9UBK2 798 aaKnown RBP12.59□□□□□ -0.39
USP1-201ENST00000339950 MYH3P11055 1940 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 ADGRA3Q8IWK6 1321 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 TTC4O95801 387 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 ABCG1P45844 678 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 ALDH5A1P51649 535 aaPredicted RBP12.59□□□□□ -0.39
USP1-201ENST00000339950 MARSP56192 900 aaKnown RBP12.59□□□□□ -0.39
USP1-201ENST00000339950 CUL2Q13617 745 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 MAPK6Q16659 721 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 C15orf52Q6ZUT6 534 aaKnown RBP12.59□□□□□ -0.39
USP1-201ENST00000339950 PDIK1LQ8N165 341 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 UNKQ9C0B0 810 aaKnown RBP12.59□□□□□ -0.39
USP1-201ENST00000339950 RAB6BQ9NRW1 208 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 GRHL1Q9NZI5 618 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 UVRAGQ9P2Y5 699 aa12.59□□□□□ -0.39
USP1-201ENST00000339950 USP54Q70EL1 1684 aa12.58□□□□□ -0.39
USP1-201ENST00000339950 ADAMTS7Q9UKP4 1686 aa12.58□□□□□ -0.39
USP1-201ENST00000339950 LGR5O75473 907 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 DGAT1O75907 488 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 FSBPO95073 299 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 RBP3P10745 1247 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 ATP2A2P16615 1042 aaKnown RBP12.58□□□□□ -0.4
USP1-201ENST00000339950 RAD23BP54727 409 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 SPARCL1Q14515 664 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 HIF1AQ16665 826 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 CLEC16AQ2KHT3 1053 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 ZNF667Q5HYK9 610 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 ERMARDQ5T6L9 678 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 TDRD10Q5VZ19 366 aaKnown RBP12.58□□□□□ -0.4
USP1-201ENST00000339950 CD302Q8IX05 232 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 PDCD7Q8N8D1 485 aaKnown RBP12.58□□□□□ -0.4
USP1-201ENST00000339950 ASAP3Q8TDY4 903 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 NLRP7Q8WX94 980 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 ADPGKQ9BRR6 497 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 GGA3Q9NZ52 723 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 SLC12A6Q9UHW9 1150 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 GTPBP10A4D1E9 387 aaKnown RBP12.58□□□□□ -0.4
USP1-201ENST00000339950 MCF2LO15068 1137 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 TROVE2P10155 538 aaKnown RBP eCLIP12.58□□□□□ -0.4
USP1-201ENST00000339950 SESN2P58004 480 aaPredicted RBP12.58□□□□□ -0.4
USP1-201ENST00000339950 OTUD4Q01804 1114 aaKnown RBP12.58□□□□□ -0.4
USP1-201ENST00000339950 MMRN1Q13201 1228 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 CNGA2Q16280 664 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 ZNF572Q7Z3I7 529 aaPredicted RBP12.58□□□□□ -0.4
USP1-201ENST00000339950 FAM71AQ8IYT1 594 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms