RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TMEM161AQ9NX61 479 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 SSU72P8A0A1W2PR75 194 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 UPP2O95045 317 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 ABL1P00519 1130 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 CSF2RAP15509 400 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 ASPAP45381 313 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 PDE6CP51160 858 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 CDH8P55286 799 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 CYP27A1Q02318 531 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 GFPT1Q06210 699 aaPredicted RBP10.72□□□□□ -0.69
HMGB3-201ENST00000325307 TCTN1Q2MV58 587 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 ZNF571Q7Z3V5 609 aaPredicted RBP10.72□□□□□ -0.69
HMGB3-201ENST00000325307 SLC47A2Q86VL8 602 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 TMEM199Q8N511 208 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 LRRC52Q8N7C0 313 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 KIF18AQ8NI77 898 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 FAM170AA1A519 330 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 ZSCAN12O43309 604 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 PNPLA4P41247 253 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 PRKCIP41743 596 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 TAF6P49848 677 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 FAM189BP81408 668 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 GRIK3Q13003 919 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 KIAA1328Q86T90 577 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 RBBP8NLQ8NC74 664 aaPredicted RBP10.72□□□□□ -0.69
HMGB3-201ENST00000325307 FAM193BQ96PV7 902 aaPredicted RBP10.72□□□□□ -0.69
HMGB3-201ENST00000325307 ADGRG1Q9Y653 693 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 TET1Q8NFU7 2136 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 PODXLO00592 558 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 KIAA0355O15063 1070 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 CALCAP01258 141 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 TNFAIP3P21580 790 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 ITGB8P26012 769 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 RFC2P35250 354 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 KRT83P78385 493 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 NOMO2Q5JPE7 1267 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 CLLU1OSQ5K130 101 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 CNKSR3Q6P9H4 555 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 JAKMIP2Q96AA8 810 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 IRX2Q9BZI1 471 aaPredicted RBP10.71□□□□□ -0.69
HMGB3-201ENST00000325307 ANO9A1A5B4 782 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 KIF2AO00139 706 aaPredicted RBP10.71□□□□□ -0.69
HMGB3-201ENST00000325307 CCP110O43303 1012 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 CLCNKBP51801 687 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 BPIFB4P59827 614 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 SV2CQ496J9 727 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 GLYCTKQ8IVS8 523 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 GPATCH11Q8N954 259 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 SLC20A1Q8WUM9 679 aa10.71□□□□□ -0.69
HMGB3-201ENST00000325307 SCN5AQ14524 2016 aa10.71□□□□□ -0.7
HMGB3-201ENST00000325307 RALGAPA2Q2PPJ7 1873 aa10.71□□□□□ -0.7
HMGB3-201ENST00000325307 KPNA7A9QM74 516 aa10.71□□□□□ -0.7
HMGB3-201ENST00000325307 PIRO00625 290 aa10.71□□□□□ -0.7
HMGB3-201ENST00000325307 ACO1P21399 889 aaKnown RBP10.71□□□□□ -0.7
HMGB3-201ENST00000325307 C7orf61Q8IZ16 206 aa10.71□□□□□ -0.7
HMGB3-201ENST00000325307 VRTNQ9H8Y1 702 aa10.71□□□□□ -0.7
HMGB3-201ENST00000325307 DNAI1Q9UI46 699 aa10.71□□□□□ -0.7
HMGB3-201ENST00000325307 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 EIF3CLB5ME19 914 aaKnown RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 ACRP10323 421 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 CD19P15391 556 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 CYP11B1P15538 503 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 LRPAP1P30533 357 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 TUSC3Q13454 348 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 PAN2Q504Q3 1202 aaKnown RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 MFSD5Q6N075 450 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 RPUSD2Q8IZ73 545 aaKnown RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 EPS8L1Q8TE68 723 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 EIF3CQ99613 913 aaKnown RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 AGPAT1Q99943 283 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 ELAC1Q9H777 363 aaKnown RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 CYP3A43Q9HB55 503 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 REXO2Q9Y3B8 237 aaKnown RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 A0A087X0T9 212 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 TMCO5BA8MYB1 307 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 HUS1O60921 280 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 B3GAT3O94766 335 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 FAM228BP0C875 321 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 GNA15P30679 374 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 GATMP50440 423 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 LILRA4P59901 499 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 ORC1Q13415 861 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 NOP9Q86U38 636 aaKnown RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 HASPINQ8TF76 798 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 BCO2Q9BYV7 579 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 SDCBP2Q9H190 292 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 LUC7LQ9NQ29 371 aaKnown RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 LZTFL1Q9NQ48 299 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 KANSL3Q9P2N6 904 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 SPTLC1O15269 473 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 HOXA2O43364 376 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 THAP12O43422 761 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 STAU1O95793 577 aaKnown RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 RPL9P32969 192 aaKnown RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 MAGEA1P43355 309 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 SLC18A3Q16572 532 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 ARHGAP29Q52LW3 1261 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 CCDC122Q5T0U0 273 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 EP400NLQ6ZTU2 488 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms