RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 FRMD3A2A2Y4 597 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 NRG2O14511 850 aaPredicted RBP21.11■□□□□ 0.97
LIME1-201ENST00000309546 GFRA3O60609 400 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 ECI2O75521 394 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 IL18RAPO95256 599 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 DCNP07585 359 aaKnown RBP21.11■□□□□ 0.97
LIME1-201ENST00000309546 GJA1P17302 382 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 TAF6P49848 677 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 PFKPQ01813 784 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 DUSP4Q13115 394 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 GPR17Q13304 367 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 PLD1Q13393 1074 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 ALCAMQ13740 583 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 MYBPC2Q14324 1141 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 ANGPT1Q15389 498 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 MLF2Q15773 248 aaPredicted RBP21.11■□□□□ 0.97
LIME1-201ENST00000309546 PHLDB3Q6NSJ2 640 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 ZSWIM2Q8NEG5 633 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 DHX58Q96C10 678 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 SHDQ96IW2 340 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 PLA2G2FQ9BZM2 168 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 CRISPLD1Q9H336 500 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 SLC27A5Q9Y2P5 690 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 SIT1Q9Y3P8 196 aa21.11■□□□□ 0.97
LIME1-201ENST00000309546 MTMR11A4FU01 709 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 GOLGA8IPA6NC78 632 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 GOLGA8JA6NMD2 632 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 PPP6R2O75170 966 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 PRPF6O94906 941 aaKnown RBP21.1■□□□□ 0.97
LIME1-201ENST00000309546 YEATS4O95619 227 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 PAX3P23760 479 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 CDR1P51861 262 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 TFAMQ00059 246 aaKnown RBP21.1■□□□□ 0.97
LIME1-201ENST00000309546 GRM2Q14416 872 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 TANGO2Q6ICL3 276 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 METTL23Q86XA0 190 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 BRSK2Q8IWQ3 736 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 ATAD1Q8NBU5 361 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 OR10T2Q8NGX3 314 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 RBAKQ9NYW8 714 aaPredicted RBP21.1■□□□□ 0.97
LIME1-201ENST00000309546 DSEQ9UL01 958 aa21.1■□□□□ 0.97
LIME1-201ENST00000309546 CYB561D2O14569 222 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 SOAT2O75908 522 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 ALDH1A3P47895 512 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 EPHB3P54753 998 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 WNT7BP56706 349 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 STARD6P59095 220 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 POU5F1Q01860 360 aaKnown RBP21.09■□□□□ 0.97
LIME1-201ENST00000309546 SV2CQ496J9 727 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 SLC44A4Q53GD3 710 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 FAM78AQ5JUQ0 283 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 CENPPQ6IPU0 288 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 TTC9BQ8N6N2 239 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 LEMD2Q8NC56 503 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 SPRYD3Q8NCJ5 442 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 PJA1Q8NG27 643 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 ELSPBP1Q96BH3 223 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 ZNF560Q96MR9 790 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 CBWD1Q9BRT8 395 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 TNMDQ9H2S6 317 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 PCIF1Q9H4Z3 704 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 SLITRK6Q9H5Y7 841 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 ZFP14Q9HCL3 533 aa21.09■□□□□ 0.97
LIME1-201ENST00000309546 CUTAO60888 179 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 LRRN2O75325 713 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 MOSPD3O75425 235 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 MICAL2O94851 1124 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 LDHAP00338 332 aaKnown RBP21.08■□□□□ 0.97
LIME1-201ENST00000309546 F13A1P00488 732 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 CYP11A1P05108 521 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 ZSCAN22P10073 491 aaPredicted RBP21.08■□□□□ 0.97
LIME1-201ENST00000309546 GARTP22102 1010 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 FCARP24071 287 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 ASIC1P78348 528 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 UBXN2BQ14CS0 331 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 TEAD2Q15562 447 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 E2F4Q16254 413 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 SLC39A12Q504Y0 691 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 FRMD5Q7Z6J6 570 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 NT5DC4Q86YG4 428 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 HPS3Q969F9 1004 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 LRRC27Q9C0I9 530 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 DNAJC25Q9H1X3 360 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 TMEM206Q9H813 350 aa21.08■□□□□ 0.97
LIME1-201ENST00000309546 ITGB3P05106 788 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 POLR2BP30876 1174 aaKnown RBP21.07■□□□□ 0.96
LIME1-201ENST00000309546 NBL1P41271 181 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 EPHA5P54756 1037 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 PRKCQQ04759 706 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 WSCD1Q658N2 575 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 SHC4Q6S5L8 630 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 STXBP4Q6ZWJ1 553 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 THEM5Q8N1Q8 247 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 GLIS3Q8NEA6 775 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 SHKBP1Q8TBC3 707 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 FAM200AQ8TCP9 573 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 FAM84AQ96KN4 292 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 ZSWIM3Q96MP5 696 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 ASB16Q96NS5 453 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 SEPT5Q99719 369 aaPredicted RBP21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms